View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_low_13 (Length: 250)
Name: NF19482_low_13
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 302103 - 301864
Alignment:
| Q |
11 |
agaatatggatacaatatttttcacatgtctcgatcaaatgcctgcgattaggtaaaaatattaaaaataacagttcggctcatgtttctgcctaaaaga |
110 |
Q |
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| T |
302103 |
agaatatggatacaatatttttcacatgtctcgatcaaatgcctgcgattaggtaaaaatattaaaaataacagttcggctcatgtttctgcctaaaaga |
302004 |
T |
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| Q |
111 |
atgagaaatgagataacagttaaccgtataaaaacatacataagagaatagcttcccaagaaaactatatctcaccagaatagaattaaacaaagacaac |
210 |
Q |
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| T |
302003 |
atgagaaatgagataacagttaaccgtataaaaacatacataagagaatagcttccaaagaaaactatatctcaccagaatagaattaaacaaagacaac |
301904 |
T |
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| Q |
211 |
attgcggtagaaattgacagaactaaatagccaacaccaa |
250 |
Q |
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| T |
301903 |
attgcggtagaaattgacagaactaaataaccaacaccaa |
301864 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 27464479 - 27464527
Alignment:
| Q |
200 |
acaaagacaacattgcggtagaaattg-acagaactaaatagccaacac |
247 |
Q |
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| T |
27464479 |
acaaagacagcattgcggtagaagttgtacagaactaaataaccaacac |
27464527 |
T |
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