View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_low_14 (Length: 228)
Name: NF19482_low_14
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 20817567 - 20817373
Alignment:
| Q |
15 |
agcacagaggatctcaaattcatactatgcaattaagaaataaaaccctgaagtggtgctatagatcatggtaatgtggtgctatatcaactaaccattc |
114 |
Q |
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| T |
20817567 |
agcacagaggatctcaaattcatactatgcaattaagaaataaaaccctgaagtggtgctatagatcatggtaatgtggtgctatatcaactaaccattc |
20817468 |
T |
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| Q |
115 |
accacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttg |
209 |
Q |
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| T |
20817467 |
accacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttg |
20817373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 33387604 - 33387734
Alignment:
| Q |
79 |
atcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagata |
178 |
Q |
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| T |
33387604 |
atcatagtaatttggtgctatatcaactaaccagtcaccacgtatatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagata |
33387703 |
T |
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| Q |
179 |
acccattcaggcttgtggtccaggcaatttg |
209 |
Q |
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| T |
33387704 |
acccactcgggcttggggtccaggcaatttg |
33387734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 38778045 - 38778146
Alignment:
| Q |
108 |
accattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatt |
207 |
Q |
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||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| |
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| T |
38778045 |
accattcaccacgaatatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatt |
38778144 |
T |
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| Q |
208 |
tg |
209 |
Q |
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|| |
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| T |
38778145 |
tg |
38778146 |
T |
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