View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_low_3 (Length: 607)
Name: NF19482_low_3
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 215 - 596
Target Start/End: Complemental strand, 43164753 - 43164375
Alignment:
| Q |
215 |
taaatcatatgattgatgtaaataaataaaatatggtagctaagttgcattaggcatgaatattaaaacaactaacctgcaaagaggaacattgcaggaa |
314 |
Q |
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| T |
43164753 |
taaagcatgtgattgatgtaaataaataaaatatggtagctaagttgcattaggaatgaatattaaaacaactaacctgcaaagaggaacattgcaggaa |
43164654 |
T |
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| Q |
315 |
tcatcatgagtttgttggcaaacatatgaatgcaatctaaacagctgccacatacgtttgcacctcaagcacccacccctcaccctcttcttgcatgttg |
414 |
Q |
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| T |
43164653 |
tcat---gagtttgttggcaaacatatgaatgcaatctaaacagctgccacatacgtttgcacctccagcaccctcccttcaccctcttcttgcatgttg |
43164557 |
T |
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| Q |
415 |
caaaatgacgaatcagaagctgaagcccttgacaggtggagtatttgctacacggtttcttttctttattaacctccacatggtatggtccaacgtcggt |
514 |
Q |
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| T |
43164556 |
caaaatgacgaatcagaagctgaagcccttgacaggtggagtatttgctacacggtttcttttctttattaacctccacatggtatggtccaacgtcggt |
43164457 |
T |
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| Q |
515 |
gcacccttccgtacatatatgctccaaacactccatcgcctccgaaagttccgcatacaacccttgctcctccctatgcttc |
596 |
Q |
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| T |
43164456 |
gcacccttccgtacatatatgctccaaacactccatcgcctccgaaagttccgcatacaacccttgctcctccctatgcttc |
43164375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 43164978 - 43164832
Alignment:
| Q |
18 |
taaataaccatcaccattggctatatttttcccacgttttatcactcatcgcatcataaggtatcacgagaatcttgtgatcaccgcaactaataacaca |
117 |
Q |
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| T |
43164978 |
taaataaccatcaccattggctatatttttcccacgttttatcactcatcgcatcataaggtatcacgagaatcttgagatcaccgcaactaataacaca |
43164879 |
T |
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| Q |
118 |
aagctccctctaatattctaatttaatagaagattatgatatattct |
164 |
Q |
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| T |
43164878 |
aagcaccctctaatattctaatttaatcgatgattatgatatattct |
43164832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 43164807 - 43164772
Alignment:
| Q |
189 |
tgatgaaacaattctagcattattattaaatcatat |
224 |
Q |
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| T |
43164807 |
tgatgaaacaattctagcattattattaaatcatat |
43164772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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