View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_low_4 (Length: 531)
Name: NF19482_low_4
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 31 - 397
Target Start/End: Original strand, 51413737 - 51414094
Alignment:
| Q |
31 |
ctattaatgctgacgtgtcctgtgtatttgacccagctagtaatcatgtggatgtggcaggtgaatcatattcaaactccagtgacaaatctgtttctga |
130 |
Q |
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| T |
51413737 |
ctattaatgctgacgtgtcctgtgtgtttgacccagctagtaatcatgtggatgtggcaggtgaatcatattcaaactccagtgacaaatctgcttctga |
51413836 |
T |
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| Q |
131 |
ggctctctctttgaatctctgtactatgtatatgttatgttaatgttaatgttaatgttagttcatgtaattgtaggtaccttattattgacctgcaatt |
230 |
Q |
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| T |
51413837 |
ggctctctctttgaatctctgtactatgtatatgtt------atgttaatgttaatgttagttcatgtaattgtaggtaccttattattgacctgcaatt |
51413930 |
T |
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| Q |
231 |
gttttcttttcgtactgtagtgttgttatgct---atcaacaaagctagcttctttcactttactattactacgtttatttcaattaccttccctttcta |
327 |
Q |
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| T |
51413931 |
gttttcttttcgtactgtagtgttgttatgctatcatcaacaaagctagcttctttcact------ttactacgtttatttcaattaccttccctttcta |
51414024 |
T |
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| Q |
328 |
aattcaaatggttaatcactcttttgctaacnnnnnnntaagaattaatatgttttgttccctctcaaaa |
397 |
Q |
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| T |
51414025 |
aattcaactggttaatcactcttttgctaacaaaaaaataagaattaatatgttttgttcactctcaaaa |
51414094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 394 - 531
Target Start/End: Original strand, 51414134 - 51414271
Alignment:
| Q |
394 |
aaaattatttcatgtttacagagatgatccttatcatttttagaagcaagaagactggaatcaaagtcggtacttgcaactttttaaattatgtgatgtg |
493 |
Q |
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| T |
51414134 |
aaaattatttcatgtttacagagatgatccttatcatttttagaagcaagaagactggaatcaaagtcggtacttgcaactttttaaattatgtgatgtg |
51414233 |
T |
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| Q |
494 |
atggtcaagtgactagaaggtcatttttatttttagtt |
531 |
Q |
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| T |
51414234 |
atggtcaagtgactagaaggtcatttttatttttagtt |
51414271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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