View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19482_low_8 (Length: 380)

Name: NF19482_low_8
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19482_low_8
NF19482_low_8
[»] chr4 (1 HSPs)
chr4 (75-365)||(43241585-43241875)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 75 - 365
Target Start/End: Complemental strand, 43241875 - 43241585
Alignment:
Q  75 tgataaatacattatacatttcataaaaacaaaatgatttttgttcaacaactttccttataacaatagttatggtggatttaaccacaacgatacaatg 174  Q
    ||||||||||||||||||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43241875 tgataaatacattatacattttataaaaacaaaatgatttttgcgcgacaactttccttataacaatagttatggtggatttaaccacaactatacaatg 43241776  T
Q  175 attttacatttttcaattctgtaatggtttctcatcaaatgtatatgtaagatcaattccatttcttactgaaattaaggcatatagttgattgaatagc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  43241775 attttacatttttcaattctgtaatggtttctcatcaaatgtatatgtaagatcaattccatttcttactgaaattaaggcatatagttgatgaaatagc 43241676  T
Q  275 aatccacaatcatacatcggcaaagaactgatacttttgaacattgttgattatgaaccgaagagctgaaattgtggttgctattgtaagt 365  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43241675 aatccacaatcatacatcggcaaagaattgatacttttgaacgttgttgattatgaaccgaagagctgaaattgtggttgctattgtaagt 43241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University