View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19482_low_9 (Length: 355)
Name: NF19482_low_9
Description: NF19482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19482_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 20015045 - 20015380
Alignment:
| Q |
14 |
atatagaggagaaatattgatatctaggannnnnnncatcctgttatcgtgttgtttatacttttaatttgcagcaatggaggcaatacgtctttttggt |
113 |
Q |
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| T |
20015045 |
atatagaggagaaatattgatatctaggatttttttcatcctgttatcatgttgtttatacttttaatttgcagcaatgaaggcaatccgtctttttggt |
20015144 |
T |
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| Q |
114 |
atggcctattttactttccaataatacctttgatagttttgggtaacttcttgcaactttcaaaaaacaatagtttcctttatatttcactatttgtttg |
213 |
Q |
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| T |
20015145 |
atggcctattttactttccaataataccttcgatagttttgggtaacttcttgcaactttcaaaaaacaata-tttcctttatatttcactatttgtttg |
20015243 |
T |
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| Q |
214 |
ttattcggttccttaatctctttgttggttcccgtatagcaacccatatacagaaaaaatgtaaagagaggagaattatattgatgcttcaacccatata |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20015244 |
ttattcggttccttaatctctttgttggttcccatatagcaacctatataatgaaaaaatgtaaagagaggagaattatactgatgcttcaacccatata |
20015343 |
T |
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| Q |
314 |
gcaagaagaaaattactgtgattgtatgtatgtatgc |
350 |
Q |
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| T |
20015344 |
gaaagaagaaaattactatgattgtatgcatgtatgc |
20015380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 23158620 - 23158851
Alignment:
| Q |
14 |
atatagaggagaaatattgatatctaggannnnnnncatcctgttatcgtgttgtttatacttttaatttgcagcaatggaggcaatacgtctttttggt |
113 |
Q |
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| T |
23158620 |
atatagaggagaattattgatatctgggatttttttcattctgttattgtgttgtttatacatttaatttgcagcaatgaaggcaataggtttttttg-t |
23158718 |
T |
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| Q |
114 |
atggcctattttactttccaataatacctttgatagttttgggtaacttcttgcaactttcaaaaaacaatagtttcctttatatttcactatttgtttg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||| ||| |||| |
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| T |
23158719 |
atggcctattttactttccaataatacctttgatagttttgggtaacttcttgcaacttccgaaaaacaatagttttcattatatttcactctttctttg |
23158818 |
T |
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| Q |
214 |
ttattcggttccttaatctctttgttggttccc |
246 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
23158819 |
ttattcagttccttaatctctttgttggttccc |
23158851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 18763675 - 18763824
Alignment:
| Q |
62 |
gtgttgtttatacttttaatttgcagcaatggaggcaatacgtctttttggtatggcctattttactttccaataatacctttgatagttttgggtaact |
161 |
Q |
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| T |
18763675 |
gtgttgtttatacttttaatttgcagcaatgaaggcaataggtttttttggtatgacctattttactttccaataataccttcgatagttttgggtaact |
18763774 |
T |
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| Q |
162 |
tcttgcaactttcaaaaaacaatagtttcctttatatttcactatttgtt |
211 |
Q |
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| T |
18763775 |
tcttgcaacttccaaaaaacaatagtttccattatatttcactctttgtt |
18763824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 267 - 355
Target Start/End: Original strand, 23159221 - 23159309
Alignment:
| Q |
267 |
aaaaaatgtaaagagaggagaattatattgatgcttcaacccatatagcaagaagaaaattactgtgattgtatgtatgtatgcttcga |
355 |
Q |
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| T |
23159221 |
aaaaaatgtaaagagaggataattatactaatgcttcaacccatatagcaagaataaaattactatgattgtatgtatgtatgcttcga |
23159309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 13759627 - 13759574
Alignment:
| Q |
94 |
aggcaatacgtctttttggtatggcctattttactttccaataatacctttgat |
147 |
Q |
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| T |
13759627 |
aggcaatacatctatttggtgtagcctattttactttccactaatacccttgat |
13759574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 24677087 - 24677043
Alignment:
| Q |
94 |
aggcaatacgtctttttggtatggcctattttactttccaataat |
138 |
Q |
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| T |
24677087 |
aggcaatacttcttttttgtatagcttattttactttccaataat |
24677043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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