View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19483_high_4 (Length: 319)

Name: NF19483_high_4
Description: NF19483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19483_high_4
NF19483_high_4
[»] chr5 (4 HSPs)
chr5 (45-293)||(8056112-8056360)
chr5 (235-301)||(8053477-8053543)
chr5 (1-45)||(30622775-30622819)
chr5 (217-261)||(7931636-7931680)
[»] chr3 (4 HSPs)
chr3 (217-293)||(47546737-47546813)
chr3 (1-45)||(4190322-4190366)
chr3 (1-45)||(9434123-9434167)
chr3 (1-45)||(10457949-10457993)
[»] chr4 (8 HSPs)
chr4 (1-46)||(49229721-49229766)
chr4 (1-46)||(32728355-32728400)
chr4 (1-45)||(711959-712003)
chr4 (1-44)||(55272433-55272476)
chr4 (1-42)||(3756303-3756344)
chr4 (1-45)||(960927-960971)
chr4 (8-44)||(36004168-36004204)
chr4 (1-45)||(46827763-46827807)
[»] chr1 (8 HSPs)
chr1 (1-46)||(38113252-38113297)
chr1 (1-47)||(45427802-45427848)
chr1 (1-45)||(14427346-14427390)
chr1 (1-45)||(44112676-44112720)
chr1 (1-44)||(35003294-35003337)
chr1 (1-44)||(48119628-48119671)
chr1 (1-46)||(41065151-41065196)
chr1 (1-46)||(45705823-45705868)
[»] chr8 (4 HSPs)
chr8 (1-45)||(34304787-34304831)
chr8 (1-53)||(35181507-35181559)
chr8 (8-45)||(10678204-10678241)
chr8 (4-45)||(19386630-19386671)
[»] chr2 (8 HSPs)
chr2 (1-48)||(18491701-18491748)
chr2 (1-42)||(4299477-4299518)
chr2 (1-45)||(966891-966935)
chr2 (1-45)||(16803967-16804011)
chr2 (1-45)||(16843249-16843293)
chr2 (1-45)||(43114556-43114600)
chr2 (1-42)||(11825711-11825752)
chr2 (1-42)||(41282031-41282072)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-42)||(45776-45817)
[»] chr6 (1 HSPs)
chr6 (1-42)||(27441544-27441585)
[»] chr7 (2 HSPs)
chr7 (1-45)||(27535288-27535332)
chr7 (1-45)||(40236918-40236962)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 45 - 293
Target Start/End: Complemental strand, 8056360 - 8056112
Alignment:
Q  45 tatatttaaaggactaaattatcgaaactctatcaatactctaaatttctttgactaaaacgtatattaacttgttgtttaactgttaaaattatgcaag 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  8056360 tatatttaaaggactaaattatcgaaactctatcaatactctaaatttctttgactaaaacgtatattcacttgttgtataactgttaaaattatgcaag 8056261  T
Q  145 taattgagtaatttacattggtttctaaaaattattgaataggtggttaagacaaagagcaagcctaaatgatttactctatcgggactacttaactata 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8056260 taattgagtaatttacattggtttctaaaaattattgaataggtggttaagacaaagagcaagcctaaatgatttactctatcgggactacttaactata 8056161  T
Q  245 tggatggtttgtggtcaagttgtggcgaggaacgaattattgtatttac 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8056160 tggatggtttgtggtcaagttgtggcgaggaacgaattattgtatttac 8056112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 8053477 - 8053543
Alignment:
Q  235 cttaactatatggatggtttgtggtcaagttgtggcgaggaacgaattattgtatttacggcgaacc 301  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||| ||||||    
T  8053477 cttaactatatggatggtttgtggtcaagttgtggagaggaacgaattttgatatttacgacgaacc 8053543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30622775 - 30622819
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  30622775 tacaatagggtgtatgattaaaggatgttcatgtaacattttcct 30622819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 7931680 - 7931636
Alignment:
Q  217 tttactctatcgggactacttaactatatggatggtttgtggtca 261  Q
    |||||||| ||| | || |||||||||||||||||||||||||||    
T  7931680 tttactctttcgagtcttcttaactatatggatggtttgtggtca 7931636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 47546813 - 47546737
Alignment:
Q  217 tttactctatcgggactacttaactatatggatggtttgtggtcaagttgtggcgaggaacgaattattgtatttac 293  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47546813 tttactctttcgggtcttcttaactatatggatggtttgtggtcaagttgtggcgaggaacgaattattgtatttac 47546737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4190322 - 4190366
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  4190322 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 4190366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9434167 - 9434123
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||| ||||||||||||||| | ||||| ||||||||||||    
T  9434167 tacaatagagtgtatgattaaagggtgttcatgtaacattttcct 9434123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10457949 - 10457993
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||| | | ||||| ||||||||||||    
T  10457949 tacaatagggtgtatgattaaaaggtgttcatgtaacattttcct 10457993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 49229721 - 49229766
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttccta 46  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  49229721 tacaatagggtgtatgattaaaggatgttcatataacattttccta 49229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32728400 - 32728355
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttccta 46  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||    
T  32728400 tacaatagggtgtatgattaaaggatgttcatgtaacattttccta 32728355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 712003 - 711959
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  712003 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 711959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 55272433 - 55272476
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcc 44  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||    
T  55272433 tacaatagagtgtatgattaaaggatgttcatgtaacattttcc 55272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3756303 - 3756344
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacatttt 42  Q
    |||||||||||||||||||||||| | ||||| |||||||||    
T  3756303 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 960927 - 960971
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||| ||||||||||||||| | ||||| ||||||||||||    
T  960927 tacaatagagtgtatgattaaagggtgttcatgtaacattttcct 960971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 36004168 - 36004204
Alignment:
Q  8 gggtgtatgattaaaggatattcatataacattttcc 44  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacattttcc 36004204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46827763 - 46827807
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||| ||||||||||||||| | ||||| ||||||||||||    
T  46827763 tacaatagagtgtatgattaaagggtgttcatgtaacattttcct 46827807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38113252 - 38113297
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttccta 46  Q
    |||||||||||||||||||||||| | |||||||||||||||||||    
T  38113252 tacaatagggtgtatgattaaagggtgttcatataacattttccta 38113297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45427802 - 45427848
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcctat 47  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||||    
T  45427802 tacaatagggtgtatgattaaaaggtattcatgtaacattttcctat 45427848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14427390 - 14427346
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  14427390 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 14427346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44112720 - 44112676
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  44112720 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 44112676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35003337 - 35003294
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcc 44  Q
    |||||||||||||||||||||||| | ||||| |||||||||||    
T  35003337 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 35003294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 48119671 - 48119628
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcc 44  Q
    |||||||||||||||||||||||| | ||||| |||||||||||    
T  48119671 tacaatagggtgtatgattaaagggtgttcatgtaacattttcc 48119628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41065196 - 41065151
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttccta 46  Q
    ||||| |||||||||||||||||| | ||||| |||||||||||||    
T  41065196 tacaacagggtgtatgattaaagggtgttcatgtaacattttccta 41065151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45705868 - 45705823
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttccta 46  Q
    ||||||||  |||||||||||||| | |||||||||||||||||||    
T  45705868 tacaatagaatgtatgattaaagggtgttcatataacattttccta 45705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34304831 - 34304787
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  34304831 tacaatagggtgtatgattaaaggatgttcatgtaacattttcct 34304787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35181559 - 35181507
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcctatatttaa 53  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| |||||||    
T  35181559 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctttatttaa 35181507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 10678204 - 10678241
Alignment:
Q  8 gggtgtatgattaaaggatattcatataacattttcct 45  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacattttcct 10678241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 19386630 - 19386671
Alignment:
Q  4 aatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    ||||||||||||||||||||| | ||||| ||||||||||||    
T  19386630 aatagggtgtatgattaaagggtgttcatgtaacattttcct 19386671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18491748 - 18491701
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcctata 48  Q
    |||||||||||||||||||||||| | ||||| |||||||||||||||    
T  18491748 tacaatagggtgtatgattaaagggtgttcatgtaacattttcctata 18491701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4299477 - 4299518
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacatttt 42  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  4299477 tacaatagggtgtatgattaaagggtgttcatataacatttt 4299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 966891 - 966935
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  966891 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 966935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16804011 - 16803967
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  16804011 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 16803967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16843293 - 16843249
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  16843293 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 16843249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43114600 - 43114556
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||    
T  43114600 tacaatagggtgtatgattaaagggtgttcatgtaacattttcct 43114556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11825711 - 11825752
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacatttt 42  Q
    |||||||||||||||||||||||| | ||||| |||||||||    
T  11825711 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41282031 - 41282072
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacatttt 42  Q
    |||||||||||||||||||||||| | ||||| |||||||||    
T  41282031 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45776 - 45817
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacatttt 42  Q
    |||||||||||||||||||||||| | ||||| |||||||||    
T  45776 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 45817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27441585 - 27441544
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacatttt 42  Q
    |||||||||||||||||||||||| | ||||| |||||||||    
T  27441585 tacaatagggtgtatgattaaagggtgttcatgtaacatttt 27441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27535288 - 27535332
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    |||||||| ||||||||||||||| | ||||| ||||||||||||    
T  27535288 tacaatagagtgtatgattaaagggtgttcatgtaacattttcct 27535332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40236962 - 40236918
Alignment:
Q  1 tacaatagggtgtatgattaaaggatattcatataacattttcct 45  Q
    ||||||||| |||||||||||||| | ||||| ||||||||||||    
T  40236962 tacaataggatgtatgattaaagggtgttcatgtaacattttcct 40236918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University