View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19483_low_1 (Length: 395)
Name: NF19483_low_1
Description: NF19483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19483_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 27994991 - 27994633
Alignment:
| Q |
18 |
aaacttggtaagaagaaacttcacttaccaaataagaaagctagtaaactatgaaccgagccaggtagcttaggacaaatgaaaggtcctacaacaaaag |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994991 |
aaacttagtaagaagaaacttcacttaccaaataagaaagctagtaaactatgaaccgagccaggtagcttaggacaaatgaaaggtcctacaacaaaag |
27994892 |
T |
|
| Q |
118 |
gtggtacaagagtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||| || |
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| T |
27994891 |
gtggtacaagagtcacaatatccaacccatgttgttctccaaattcaagaacagctttctcagctagtgtcttagaaacaccatatgaccaagcaaatgg |
27994792 |
T |
|
| Q |
218 |
cttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaa |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| || |||||| |
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| T |
27994791 |
cttcaaagttctaagaatattcacatcactccaataactttcatccattgtatcttcttctttatcttgcgtatacacagcagaagcactagaggtgtaa |
27994692 |
T |
|
| Q |
318 |
ataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatc |
376 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27994691 |
ataactcttttcaatgtctttgaatttttgcatgcttttagaattcctaatgctccatc |
27994633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 376
Target Start/End: Complemental strand, 27959489 - 27959143
Alignment:
| Q |
30 |
aagaaacttcacttaccaaataagaaagctagtaaactatgaaccgagccaggtagcttaggacaaatgaaaggtcctacaacaaaaggtggtacaagag |
129 |
Q |
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||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||| ||||| || ||||| ||||||||| ||||||||||| |
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| T |
27959489 |
aagaaacttcacttaccaaataagaaagctagtgaactaaagatagagccaggaagcttagggcaaataaagggtccaacaacaaaacttggtacaagag |
27959390 |
T |
|
| Q |
130 |
tcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttct |
229 |
Q |
| |
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| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959389 |
ttacaatatccaaaccatgttgttctccaaattcaagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttct |
27959290 |
T |
|
| Q |
230 |
aagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959289 |
aagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttc |
27959190 |
T |
|
| Q |
330 |
actgtctttgaatttttgcatgcttttagaattcctaatgctccatc |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959189 |
actgtctttgaatttttgcatgcttttagaattcctaatgctccatc |
27959143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 27985809 - 27985451
Alignment:
| Q |
18 |
aaacttggtaagaagaaacttcacttaccaaataagaaagctagtaaactatgaaccgagccaggtagcttaggacaaatgaaaggtcctacaacaaaag |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || | ||||||||||||||||||||||||||| |||||||||| |
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| T |
27985809 |
aaacttggtaagaagaaacttcacttaccaaataagaaagctagtgaactatggacagaactaggtagcttaggacaaatgaaaggtccaacaacaaaag |
27985710 |
T |
|
| Q |
118 |
gtggtacaagagtcacaatatccaacccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaagg |
217 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27985709 |
tgggtagaagagtcacaatatccaaaccatgttgttctccaaattcaagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaagg |
27985610 |
T |
|
| Q |
218 |
cttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttctttgtcttgcatatacacagcagaagcacttgaagtgtaa |
317 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||| |||||| |
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|
| T |
27985609 |
tttcaaagttctaagattattcacatcactccaataactttcatccattacctctacttctttgttttgcatgcacacagcagaagcacttgaggtgtaa |
27985510 |
T |
|
| Q |
318 |
ataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatc |
376 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27985509 |
acaactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgccccatc |
27985451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 75 - 376
Target Start/End: Complemental strand, 28013612 - 28013311
Alignment:
| Q |
75 |
gagccaggtagcttaggacaaatgaaaggtcctacaacaaaaggtggtacaagagtcacaatatccaacccatgttgttctccaaattctagaacagctt |
174 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||| | |||||||| ||||| | |||||||| ||| || |||||||||||||||||||| |||||||||| |
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|
| T |
28013612 |
gagccagggcgcttgggacaaatgaatggtccaagaacaaaagttggtattatagtcacaacatctaaaccatgttgttctccaaattcaagaacagctt |
28013513 |
T |
|
| Q |
175 |
tctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttc |
274 |
Q |
| |
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|||| || | |||||||||| | ||||||||||||||| || ||||||| |||||||| ||| |||||||||||||||| |||||||||||||| || |
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| T |
28013512 |
tctctgccatagttttagaaattgaatatgaccaagcaaatggtttcaaatctctaagaagattttcatcactccaataactctcatccattacatcatc |
28013413 |
T |
|
| Q |
275 |
ttctttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctcca |
374 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28013412 |
atctttatcttgccaatacacagcagaagcacttgaagtgtaaataactctcttcacggtctttgaatttttgcatgcttttagaattcctaatgttcca |
28013313 |
T |
|
| Q |
375 |
tc |
376 |
Q |
| |
|
|| |
|
|
| T |
28013312 |
tc |
28013311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 78 - 376
Target Start/End: Complemental strand, 28005670 - 28005372
Alignment:
| Q |
78 |
ccaggtagcttaggacaaatgaaaggtcctacaacaaaaggtggtacaagagtcacaatatccaacccatgttgttctccaaattctagaacagctttct |
177 |
Q |
| |
|
||||| ||||||||||||||||| | ||| ||||| |||| ||||| | |||||||| ||| || ||| ||||||||||||| ||||||||| | |||| |
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|
| T |
28005670 |
ccaggaagcttaggacaaatgaaggatccaacaactaaagttggtattatagtcacaacatctaaaccaagttgttctccaaactctagaacaaccttct |
28005571 |
T |
|
| Q |
178 |
cagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacatcactccaataactttcatccattacatcttcttc |
277 |
Q |
| |
|
| || | |||||||||| | ||| |||||| |||| || ||||||| |||||||||||| |||||||||||||||| ||||||||||||| || || |
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| T |
28005570 |
ctgccattgttttagaaattgaatacgaccaaccaaatggtttcaaatctctaagaatattttcatcactccaataactctcatccattacattgtcatc |
28005471 |
T |
|
| Q |
278 |
tttgtcttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatc |
376 |
Q |
| |
|
||| |||||| |||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28005470 |
tttatcttgccaatacactgctgaagcacttgaagtgtaaataactctcttcacggtctttgaatttttgcatgcttttagaattcctaatgctccatc |
28005372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 370
Target Start/End: Complemental strand, 27944826 - 27944600
Alignment:
| Q |
144 |
ccatgttgttctccaaattctagaacagctttctcagctagggttttagaaacagcatatgaccaagcaaaaggcttcaaatttctaagaatattcacat |
243 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||||| | || |||||||||||||| |||| |||| || || | | ||||||| | || |||| |
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|
| T |
27944826 |
ccattttgttcaccaaattcaagaacagctttctcagccaatgtcttagaaacagcataattccaaccaaatggtttaacacttctaagcaaatcaacat |
27944727 |
T |
|
| Q |
244 |
cactccaataactttcatccattacatcttcttctttgtc-ttgcatatacacagcagaagcacttgaagtgtaaataactcttttcactgtctttgaat |
342 |
Q |
| |
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||||||||| ||| ||||||| ||||||| ||||| | ||| || | ||||||||| ||||||||||||| |||| ||| |||||||||||||||| |
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| T |
27944726 |
cactccaatcactctcatccaacacatctttgtcttttccattgaatgaa-acagcagaaccacttgaagtgtatataaatctcttcactgtctttgaat |
27944628 |
T |
|
| Q |
343 |
ttttgcatgcttttagaattcctaatgc |
370 |
Q |
| |
|
| |||||||||| ||| |||||||| |
|
|
| T |
27944627 |
tcacacatgcttttaaaatgcctaatgc |
27944600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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