View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19483_low_2 (Length: 389)
Name: NF19483_low_2
Description: NF19483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19483_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 127 - 370
Target Start/End: Original strand, 10836909 - 10837152
Alignment:
| Q |
127 |
gtagttgataaaatttgaaagacgtatcttcaaaaatgttgtatttttcttatgatttgaatgaatggacaacctattttctgaataataataataagat |
226 |
Q |
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| T |
10836909 |
gtagttgataaaatttgaaagacgtatcttcaaaaatgttgtatttttcttatgatttgaatgaatggacaacctattttctgaataataataataagag |
10837008 |
T |
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| Q |
227 |
taaaattttaggaagtgataactaacttgcctcctaaaaaatcttacacgtccttttcaattgtgcttttgtattgtacgtcaattggtcccaacaactc |
326 |
Q |
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| T |
10837009 |
taaaattttaggaagtgataactaacttgcctcctaaaaaatcttacacgtccttttcaattgtgcttttgtattgtacgtcaattggtcccaacaactc |
10837108 |
T |
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| Q |
327 |
ccaggctccaaatgctgattccagaactcaaccaatgtccacac |
370 |
Q |
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| T |
10837109 |
ccaggctccaaatgctgattccagaactcaaccaatgtccacac |
10837152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 10836792 - 10836882
Alignment:
| Q |
7 |
tcgaagaatatactagtactaggaggaacaaaacaatgcacttaaaatgggtgtttagat-gtgtggcctccagctatttgctgtgcaacgattaa |
101 |
Q |
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| T |
10836792 |
tcgaagaatatactagtactaggaggaacaa-----tgcacttataatgggtgtttagatagtgtggcctccagctatttgctgtgcaacgattaa |
10836882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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