View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19483_low_3 (Length: 354)

Name: NF19483_low_3
Description: NF19483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19483_low_3
NF19483_low_3
[»] chr7 (4 HSPs)
chr7 (229-354)||(48593579-48593704)
chr7 (152-224)||(49172351-49172423)
chr7 (61-130)||(49172282-49172351)
chr7 (63-131)||(40187634-40187703)
[»] chr5 (5 HSPs)
chr5 (68-133)||(32565516-32565582)
chr5 (62-132)||(6489000-6489071)
chr5 (64-132)||(20370130-20370198)
chr5 (61-124)||(11017177-11017241)
chr5 (77-132)||(27721687-27721743)
[»] chr1 (3 HSPs)
chr1 (68-133)||(48131231-48131297)
chr1 (62-132)||(42045369-42045440)
chr1 (79-131)||(44243867-44243920)
[»] chr2 (2 HSPs)
chr2 (62-129)||(34191305-34191373)
chr2 (79-132)||(346138-346192)
[»] chr8 (6 HSPs)
chr8 (78-124)||(41625195-41625242)
chr8 (63-131)||(11708980-11709049)
chr8 (68-132)||(27191751-27191816)
chr8 (68-132)||(39821877-39821942)
chr8 (87-134)||(33445561-33445609)
chr8 (79-134)||(33451363-33451419)
[»] scaffold0012 (1 HSPs)
scaffold0012 (68-133)||(118811-118877)
[»] chr6 (2 HSPs)
chr6 (95-133)||(11129641-11129679)
chr6 (77-124)||(30639438-30639486)
[»] chr4 (3 HSPs)
chr4 (62-131)||(13121538-13121608)
chr4 (63-132)||(22164267-22164337)
chr4 (77-124)||(50442759-50442807)
[»] chr3 (3 HSPs)
chr3 (77-131)||(20949933-20949986)
chr3 (61-130)||(37920994-37921064)
chr3 (63-131)||(48315022-48315091)
[»] scaffold0445 (1 HSPs)
scaffold0445 (61-124)||(4471-4535)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 48593579 - 48593704
Alignment:
Q  229 aaagtcatagaaacaaagagaacagagatttatggaatattcgttgtgacttctttccacaattccaagacaaagggtgcctactcactagattccatca 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48593579 aaagtcatagaaacaaagagaacagagatttatggaatattcgttgtgacttctttccacaattccaagacaaagggtgcctactcactagattccatca 48593678  T
Q  329 taaacaaaacaagataaactaaaggc 354  Q
    ||||||||||||||||||||||||||    
T  48593679 taaacaaaacaagataaactaaaggc 48593704  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 49172351 - 49172423
Alignment:
Q  152 atataagaagtggttcatgtgcatcgtcttagaatgtatattcacgtgcattgtcaagataaaattagaattc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49172351 atataagaagtggttcatgtgcatcgtcttagaatgtatattcacgtgcattgtcaagataaaattagaattc 49172423  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 49172282 - 49172351
Alignment:
Q  61 tccgggatttgaactgcagaccttacatatattagcattattcctgccaactgagctaagctcatgagga 130  Q
    |||||||||| |||||||||||||||||||||||||||| | |||  ||||||||||||||||| |||||    
T  49172282 tccgggatttaaactgcagaccttacatatattagcattgtccctatcaactgagctaagctcacgagga 49172351  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 40187634 - 40187703
Alignment:
Q  63 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 131  Q
    |||| ||||||| ||||||||||||||||||| ||||| | ||| ||||||||| |||||||||||||||    
T  40187634 cggggtttgaaccgcagaccttacatatattatgcattgtccctaccaactgagttaagctcatgaggac 40187703  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 32565582 - 32565516
Alignment:
Q  68 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 133  Q
    |||||||| | |||||||||||||||| ||||||| ||| ||| |||||||||||||| ||||||||    
T  32565582 tttgaacttcggaccttacatatattatgcattatccctaccagctgagctaagctcacgaggacaa 32565516  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 6489071 - 6489000
Alignment:
Q  62 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    ||||| |||||||  |||||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||||    
T  6489071 ccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 20370130 - 20370198
Alignment:
Q  64 gggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    |||||||||||| || |||||  |||||||| ||||||| ||| |||||||||||||||||| |||||||    
T  20370130 gggatttgaact-caaaccttgtatatattatgcattatccctaccaactgagctaagctcacgaggaca 20370198  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 11017241 - 11017177
Alignment:
Q  61 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctca 124  Q
    ||||||||| ||||  |||||||| ||||||||| ||||||| ||| ||||||||||||| ||||    
T  11017241 tccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaactca 11017177  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 27721687 - 27721743
Alignment:
Q  77 cagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    ||||| || ||||||||| ||||| ||||| |||||||||||||||||| |||||||    
T  27721687 cagactttgcatatattatgcattgttcctaccaactgagctaagctcacgaggaca 27721743  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 48131231 - 48131297
Alignment:
Q  68 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 133  Q
    |||||||| |||||||||||||||||| |||||||  |||||||||||| ||| |||| ||||||||    
T  48131231 tttgaactccagaccttacatatattatgcattatctctgccaactgagttaaactcacgaggacaa 48131297  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 42045369 - 42045440
Alignment:
Q  62 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    ||||| |||||||| |||||||| ||||||||| ||||| | | | |||||||||||||||||| |||||||    
T  42045369 ccggggtttgaactccagaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggaca 42045440  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 44243920 - 44243867
Alignment:
Q  79 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 131  Q
    |||||||||||||||| ||||| ||||| ||||||||||||| |||| ||||||    
T  44243920 gaccttacatatattatgcattgttcctaccaactgagctaaactcacgaggac 44243867  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 34191305 - 34191373
Alignment:
Q  62 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgagg 129  Q
    |||||||||||||   |||| |||||||||||| ||||| | ||| |||||||||||||||||||||||    
T  34191305 ccgggatttgaaccttagactttacatatattatgcattgtccctaccaactgagctaagctcatgagg 34191373  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 346138 - 346192
Alignment:
Q  79 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    |||||||||||||||| |||||||||   |||||||||||||||||| |||||||    
T  346138 gaccttacatatattatgcattattcaaaccaactgagctaagctcacgaggaca 346192  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 41625242 - 41625195
Alignment:
Q  78 agaccttacatatatta-gcattattcctgccaactgagctaagctca 124  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  41625242 agaccttacatatattatgcattattcataccaactgagctaagctca 41625195  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 11709049 - 11708980
Alignment:
Q  63 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 131  Q
    |||| |||||||| | |||||| ||||||||| ||||| | ||| |||||||||||||||||| ||||||    
T  11709049 cggggtttgaacttcggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 11708980  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 27191816 - 27191751
Alignment:
Q  68 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    |||||||| |||||||| ||||||||| | ||| ||| | |||||||||||||||||| |||||||    
T  27191816 tttgaacttcagaccttgcatatattatgaattgttcttaccaactgagctaagctcacgaggaca 27191751  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 39821942 - 39821877
Alignment:
Q  68 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    |||||||  |||||||| ||||||||| ||||| | ||| |||||||||||||||||| |||||||    
T  39821942 tttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 39821877  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 33445609 - 33445561
Alignment:
Q  87 atatatta-gcattattcctgccaactgagctaagctcatgaggacaac 134  Q
    |||||||| ||||| ||||| |||||||||||||||||| |||||||||    
T  33445609 atatattatgcattgttcctaccaactgagctaagctcacgaggacaac 33445561  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 33451363 - 33451419
Alignment:
Q  79 gaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaac 134  Q
    |||||| ||||||||| ||||||| | | |||||||||||||||||| |||||||||    
T  33451363 gaccttgcatatattatgcattatccataccaactgagctaagctcacgaggacaac 33451419  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 118877 - 118811
Alignment:
Q  68 tttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggacaa 133  Q
    |||||||| |||||||||||||| ||| ||||| |||   |||||||||||||||||| ||||||||    
T  118877 tttgaactccagaccttacatattttatgcattgttcaaaccaactgagctaagctcacgaggacaa 118811  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 133
Target Start/End: Original strand, 11129641 - 11129679
Alignment:
Q  95 gcattattcctgccaactgagctaagctcatgaggacaa 133  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  11129641 gcattgttcctaccaactgagctaagctcatgaggacaa 11129679  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 30639438 - 30639486
Alignment:
Q  77 cagaccttacatatatta-gcattattcctgccaactgagctaagctca 124  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||| ||||    
T  30639438 cagaccttgcatatattatgcattattcctaccaactgagctaaactca 30639486  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 13121608 - 13121538
Alignment:
Q  62 ccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 131  Q
    ||||| |||||||| |||||||| ||||||||| ||||| | ||| |||||| ||||||||||| ||||||    
T  13121608 ccggggtttgaacttcagaccttgcatatattatgcattgtccctaccaactaagctaagctcacgaggac 13121538  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 22164267 - 22164337
Alignment:
Q  63 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggaca 132  Q
    |||| |||||||  |||||||||||||||||| ||||| ||||| |||||| |||||| |||| |||||||    
T  22164267 cggggtttgaaccccagaccttacatatattatgcattgttcctaccaactaagctaaactcacgaggaca 22164337  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 50442759 - 50442807
Alignment:
Q  77 cagaccttacatatatta-gcattattcctgccaactgagctaagctca 124  Q
    |||||||| ||||||||| ||||||| ||| ||||||||||||||||||    
T  50442759 cagaccttgcatatattatgcattatccctaccaactgagctaagctca 50442807  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 20949986 - 20949933
Alignment:
Q  77 cagaccttacatatattagcattattcctgccaactgagctaagctcatgaggac 131  Q
    ||||||||||||||||| ||||| ||| | ||| |||||||||||||||||||||    
T  20949986 cagaccttacatatatt-gcattgttcataccatctgagctaagctcatgaggac 20949933  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 37920994 - 37921064
Alignment:
Q  61 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgagga 130  Q
    |||||||||||||| |||||| || ||||||||| ||||||| |||  |||||||||||| |||| |||||    
T  37920994 tccgggatttgaaccgcagacattgcatatattatgcattatccctatcaactgagctaaactcacgagga 37921064  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 48315022 - 48315091
Alignment:
Q  63 cgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctcatgaggac 131  Q
    ||||||||||||  | |||||| ||||||||| ||||||| | | |||||||||||||||||| ||||||    
T  48315022 cgggatttgaaccccggaccttgcatatattatgcattatccttaccaactgagctaagctcacgaggac 48315091  T

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Target: scaffold0445 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 124
Target Start/End: Complemental strand, 4535 - 4471
Alignment:
Q  61 tccgggatttgaactgcagaccttacatatatta-gcattattcctgccaactgagctaagctca 124  Q
    ||||||||| |||||  ||||||||||||||||| |||||||||||  ||||| || ||||||||    
T  4535 tccgggattcgaactctagaccttacatatattatgcattattcctatcaacttagttaagctca 4471  T

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