View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19483_low_5 (Length: 307)
Name: NF19483_low_5
Description: NF19483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19483_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 8776520 - 8776227
Alignment:
| Q |
1 |
atctccaaaacactaaaaacacatagcataaagacgtgttatgggagaaaataaaaattaattttttggatttgtttctttnnnnnnncggaacagcgtg |
100 |
Q |
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| T |
8776520 |
atctccaaaacactaaaaacacatagcataaagacgtgttatgggagaaaataaaaattaattttttggatttgtttctttaaaaaaacggaacagcgtg |
8776421 |
T |
|
| Q |
101 |
catgtttgtggaccgtttgcaaaatatcattaatatagagatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaaagg |
200 |
Q |
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| T |
8776420 |
catgtttgtggaccgtttgcaaaatatcattaatatagagacacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaaagg |
8776321 |
T |
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| Q |
201 |
ggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtattc |
294 |
Q |
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| T |
8776320 |
ggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtattc |
8776227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 294
Target Start/End: Complemental strand, 8788169 - 8787975
Alignment:
| Q |
98 |
gtgcatgtttgtggaccgtttgcaaaatatcattaatatagagatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaa |
197 |
Q |
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| T |
8788169 |
gtgcatgtttgtagaccattagcaaaatatgactaatacagg--tacactgcaaagttgaagacacttacagatgaatcatatctttttgaaggaacgaa |
8788072 |
T |
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| Q |
198 |
aggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtattc |
294 |
Q |
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| T |
8788071 |
aggggtatcttcacaaacttgataaggttccaaaatagtaacatctggatcggagcaattacccccatcctccaccgtgggtgtgtttgtggtattc |
8787975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 291
Target Start/End: Complemental strand, 8782411 - 8782220
Alignment:
| Q |
98 |
gtgcatgtttgtggaccgtttgcaaaatatcattaatatagagatacactgtgaagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaa |
197 |
Q |
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|||||||||||| |||| |||| ||||||| | ||||| ||| | || ||| |||||||||| | |||| |||| ||||||| | ||||||| |||||| |
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| T |
8782411 |
gtgcatgtttgtagaccatttgaaaaatattactaatacagaaa--cagtgtaaagttgaagaaacttacagatgaatcatatatatttgaaggaacgaa |
8782314 |
T |
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| Q |
198 |
aggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggta |
291 |
Q |
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| T |
8782313 |
agggttagcttcacaaattggataagatttcaaaatagttacatctggatcggagggaatacccccatcctccaccttggatgtgtttgtggta |
8782220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 2 - 294
Target Start/End: Original strand, 2541154 - 2541449
Alignment:
| Q |
2 |
tctccaaaacactaaaaacacatagcataaagacgtgttatgggagaaaataaaaattaattttttggatttgtttctttnnnnnnn-cggaacagcgtg |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| | |||||| || ||||||| | ||| ||| || |
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| T |
2541154 |
tctccaaaacactaaaaacagatagcataaagacgtgttatggaagaagttaaaaattaactgtttggaattttttcttttaaaaaaactgaatagcatg |
2541253 |
T |
|
| Q |
101 |
catgtttgtggaccgtttgcaaaatatcattaatatagagatacactgtg--aagttgaagatatttaccgatgtatcatatgtttttgaagaaacgaaa |
198 |
Q |
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||||||| ||| | |||||||||||| | ||||| ||||||| |||||| |||||||||| | |||| |||| ||||||||| ||||||||||||||| |
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| T |
2541254 |
catgtttaaggatcatttgcaaaatatgactaatacagagatatactgtgcaaagttgaagacacttactgatgaatcatatgtctttgaagaaacgaaa |
2541353 |
T |
|
| Q |
199 |
ggggtgttttcacaaattggataagaatccaaaataatcagatctgaatcagaggaattattctcatcctccacattggatgtgttggtggtattc |
294 |
Q |
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||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||| |||| |
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| T |
2541354 |
ggggtgtttccacagattggaaaagaatccaaaataattagatctgaatcagaggaattactatcatcctccacattggatgtgttagtggcattc |
2541449 |
T |
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