View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19483_low_6 (Length: 272)
Name: NF19483_low_6
Description: NF19483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19483_low_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 45195851 - 45196117
Alignment:
| Q |
11 |
cataggatagaaaaaataatgacattatataccagtgtcttggtttgacctttagttcaatcctcataataaaatgaatt-------tattttcattgat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45195851 |
cataggatagaaaaaataatgacattatatactagtgccttggtttgacctttagttcaatcctcataataaaatgaattatgagtttattttcattgat |
45195950 |
T |
|
| Q |
104 |
cggacatgaaaggaagagttaggatcctcctcatttcttagnnnnnnnnnnnnnnnnnncttcattactttagttttgtatgtataaatcacgtaagtgc |
203 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
45195951 |
cggacttgaaaggaagagttaggatcctcctcatttcttagaaaaagaaaaaaaaat--cttcattactttagttttgtatgtataaatcacataaatgc |
45196048 |
T |
|
| Q |
204 |
ttaataaatatcatatattttgaaaaagagaagtgctatatctcgcgaacaaaatcgtcctgagaattc |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||| |
|
|
| T |
45196049 |
ttaataaatatcatatattttgaaaaagagaagtgatatacctcgcgaacaaaatcgttccgagaattc |
45196117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 8227881 - 8227939
Alignment:
| Q |
166 |
cattactttagttttgtatgtataaatc-acgtaagtgcttaataaatatcatatattt |
223 |
Q |
| |
|
||||||| ||||||||| |||||||||| || ||| |||||||||||||||| |||||| |
|
|
| T |
8227881 |
cattactatagttttgtgtgtataaatcaacataaatgcttaataaatatcaaatattt |
8227939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University