View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19484_high_3 (Length: 308)

Name: NF19484_high_3
Description: NF19484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19484_high_3
NF19484_high_3
[»] chr3 (1 HSPs)
chr3 (175-223)||(43881407-43881455)
[»] chr2 (2 HSPs)
chr2 (26-63)||(39341215-39341252)
chr2 (38-67)||(44458489-44458518)
[»] chr7 (1 HSPs)
chr7 (10-59)||(12110254-12110303)
[»] chr5 (1 HSPs)
chr5 (15-59)||(37914648-37914692)
[»] chr1 (2 HSPs)
chr1 (24-68)||(1510476-1510519)
chr1 (15-59)||(35058904-35058948)


Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 43881455 - 43881407
Alignment:
Q  175 tatgaagagatgacaaggtcatggaatgactatcaggtactcaagtttt 223  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  43881455 tatgaagagatgacaaggttatggaatgattatcaggtactcaagtttt 43881407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 39341215 - 39341252
Alignment:
Q  26 ataagttacaaattaagctgtttatccaaacaggacct 63  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  39341215 ataagctacaaattaagctgtttatccaaacaggacct 39341252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 44458489 - 44458518
Alignment:
Q  38 ttaagctgtttatccaaacaggaccttagt 67  Q
    ||||||||||||||||||||||||||||||    
T  44458489 ttaagctgtttatccaaacaggaccttagt 44458518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 12110303 - 12110254
Alignment:
Q  10 cataggtgcatattctataagttacaaattaagctgtttatccaaacagg 59  Q
    |||| |||| ||| ||||||||| |||||||||||||||||| |||||||    
T  12110303 cataagtgcttatgctataagttgcaaattaagctgtttatcgaaacagg 12110254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 37914692 - 37914648
Alignment:
Q  15 gtgcatattctataagttacaaattaagctgtttatccaaacagg 59  Q
    |||| ||| ||| ||| ||||||||||||||||||||||||||||    
T  37914692 gtgcttatgctagaagctacaaattaagctgtttatccaaacagg 37914648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 1510476 - 1510519
Alignment:
Q  24 ctataagttacaaattaagctgtttatccaaacaggaccttagtt 68  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||    
T  1510476 ctataagatacaaat-aagctgtttatccaaacaggtccttagtt 1510519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 35058904 - 35058948
Alignment:
Q  15 gtgcatattctataagttacaaattaagctgtttatccaaacagg 59  Q
    |||| ||| ||||||||| |||| |||||||||||||||||||||    
T  35058904 gtgcttatgctataagttgcaaaataagctgtttatccaaacagg 35058948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University