View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19484_high_4 (Length: 283)
Name: NF19484_high_4
Description: NF19484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19484_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 7227580 - 7227832
Alignment:
| Q |
15 |
caattctttctctgagggtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatactcatgaaatttaga |
114 |
Q |
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| T |
7227580 |
caattctttctccaagggtgtgatcaatggaagctagtcaatcaaggttgaggagatcatagatgtcttgaatcaacgtagcatactcatgaaatttaga |
7227679 |
T |
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| Q |
115 |
agttgtctccttaagaattttaacacattggagggattctgtgtaggacacttcttgaaagttcatctccttaacaaataacttcccacggtgaatggat |
214 |
Q |
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| T |
7227680 |
agttgtctccttaagaattttaacacattggagggattccgtgtaggacacttcttgaaagttcatttccttaacaaataacttcccacggtgaatggat |
7227779 |
T |
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| Q |
215 |
ggatctcatcaagaaggatgtcaaatgtgcctgcaatgtaatttaagaaactag |
268 |
Q |
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| T |
7227780 |
ggagctcaccaaggaggatgtcaaat-tggctgcaatgtaatttaagaaactag |
7227832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 7208622 - 7208706
Alignment:
| Q |
22 |
ttctctgagggtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatactcatga |
106 |
Q |
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| T |
7208622 |
ttctccgagggtgtgatcaatggaaaccagacagtcaaggtcgaggagatcctagatgtcttgaatcaacgtagcatactcatga |
7208706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 46693110 - 46693043
Alignment:
| Q |
28 |
gagggtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtag |
95 |
Q |
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| T |
46693110 |
gagggtgtgagcaatggaagctagtcagccaaggttgaggagagttttgatgtcatgaatcaacgtag |
46693043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 8838477 - 8838362
Alignment:
| Q |
32 |
gtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatactcatgaaatttagaagttgtctccttaagaa |
131 |
Q |
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| T |
8838477 |
gtgtgatcaacggaagctagccaatgaagattgaggaggtccttgatgtcttgaatcaatgtagcatacttataaaatctaggggttagctctttaagaa |
8838378 |
T |
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| Q |
132 |
ttttaacacattggag |
147 |
Q |
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| T |
8838377 |
tttgaacacaatggag |
8838362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 6797450 - 6797519
Alignment:
| Q |
32 |
gtgtgatcaatggaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatact |
101 |
Q |
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| T |
6797450 |
gtgtgatcaatagaagcttgccagttaagattgaggagatccttgatgttttgaatcaacgtagcatact |
6797519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 47403426 - 47403361
Alignment:
| Q |
44 |
gaagctagtcagtcaaggtcgaggagatcatagatgtcttgaatcaacgtagcatactcatgaaat |
109 |
Q |
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| T |
47403426 |
gaagctagccagtcaagattgaggaggtccttgatgtcttgaatcaaagtagcatacttatgaaat |
47403361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 47403247 - 47403211
Alignment:
| Q |
219 |
ctcatcaagaaggatgtcaaatgtgcctgcaatgtaa |
255 |
Q |
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| T |
47403247 |
ctcagcaagaaggatgtcagatgtgcctgcaatgtaa |
47403211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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