View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19484_low_2 (Length: 487)
Name: NF19484_low_2
Description: NF19484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19484_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 46 - 469
Target Start/End: Original strand, 11840202 - 11840626
Alignment:
| Q |
46 |
taaattgatcaaatccctatataaaaatttagaaaatattatatgagctgcaaatcagagatcaatttttcaagaatatttcatcataaataaccacaac |
145 |
Q |
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| T |
11840202 |
taaattgatcaaatccctatataaaaatttagaaaatattatatgagctgcaaatcagagatcaatttttcaagaatatttcatcataaataaccacaac |
11840301 |
T |
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| Q |
146 |
aaaaaagatctagcaaacaaatatgtttattagaagtagaaatatttcattgatcgatgaaaatttcaacatatataaagcaatcaacggcacatatata |
245 |
Q |
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| T |
11840302 |
aaaaaagatctagcaaacaaatatgtttattagaagtagaaatatttcattgatcgatgaaaatttcaacatatataaagcaatcaacagcacatatata |
11840401 |
T |
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| Q |
246 |
tgat--------atattctttcaaagnnnnnnnnnntgatatatacatataacatatacctacaaaataacaaagtgcactaattgctaaaattgcttac |
337 |
Q |
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| T |
11840402 |
tgatatatatacatattctttcaaagaaaaaaaaaatgatatat-------acatatacctacaaaataacaaagtgcactaattgctaaaattgcttac |
11840494 |
T |
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| Q |
338 |
acaaaagtgatagcttattgcatatatataagatgagatctttatataggatacataaattgccaaaggatcattggttgcccttccttataggttaaga |
437 |
Q |
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| T |
11840495 |
acaaaagtgatagcttattgcataaatatgagatgagatctttatataggatacataaattgccaaaggatcattggttgcccttccttataggttaaga |
11840594 |
T |
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| Q |
438 |
tcttgagggtttctttcaaccatgacctagct |
469 |
Q |
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| T |
11840595 |
tcttgagggtttctttcaaccatgacctagct |
11840626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 371 - 449
Target Start/End: Original strand, 11826698 - 11826776
Alignment:
| Q |
371 |
tgagatctttatataggatacataaattgccaaaggatcattggttgcccttccttataggttaagatcttgagggttt |
449 |
Q |
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| T |
11826698 |
tgagatctttatatgcgatacataaattgccaaaggataattagttgcccttccatataggttaagatcttgagggttt |
11826776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 11840144 - 11840202
Alignment:
| Q |
15 |
gatatcatatattaagtttaacatcatggtgtaaattgatcaaatccctatataaaaat |
73 |
Q |
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| T |
11840144 |
gatatcatatattaagtttaacatcatggtgtaaattgatcaaatccctatataaaaat |
11840202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 11826549 - 11826621
Alignment:
| Q |
178 |
gaagtagaaatatttcattgatcga----tgaaaatttcaacatatataaagcaatcaacggcacatatatat |
246 |
Q |
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| T |
11826549 |
gaagtagaaatatttcattgatctagctatgaaaatttcaacatatataaagcaatcaacgacacatatatat |
11826621 |
T |
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