View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19484_low_3 (Length: 406)
Name: NF19484_low_3
Description: NF19484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19484_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 21009717 - 21009326
Alignment:
| Q |
1 |
gcaagtgatttgagtgtgtatgtgatttagattctttattattgttgtaaggtgtaataacttttacaaccgttagaattagttataacggttttaaaag |
100 |
Q |
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| T |
21009717 |
gcaagtgatttgagtgtgtatgagatttagattctttattattgttgcaaggtgtaataacttttacaaccattagaattagttctaacggttttaaaaa |
21009618 |
T |
|
| Q |
101 |
tcgttacatggtacatcaatgtaatagagatccttataagtatatatgttagatccttataggtatgtatgccagagagattttaattatctatcgtcaa |
200 |
Q |
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| T |
21009617 |
tcgttccatagtacatcaatgtaatagagatctttataagtatatatgtcagattcttataggtatgtatgtcagagagattttaattatctatcgtcag |
21009518 |
T |
|
| Q |
201 |
tatattgatggttgtttgattgaaatcgaactgcaaggatttaaatttcaatatgctaactttaaaatctaaattatttgaattagaccaaacttttatt |
300 |
Q |
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| T |
21009517 |
tatatcgatggttgtttgatagatatcgaactgcacggatttaaatttcaatatgctaactttaaaatctaaattatttgaattagaccaaacttttatt |
21009418 |
T |
|
| Q |
301 |
tatgaggtaatcaaaatc-tgtgagagagattgatctactagactataagatcacatcaacaattaagaagaatagttattgagtgagtagt |
391 |
Q |
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|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21009417 |
tatgaggtaatcaaaatcttatgagagggattgatctactagactataagatcacatcaacaattaagaagaatagttaatgagtgagtagt |
21009326 |
T |
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