View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19484_low_4 (Length: 351)
Name: NF19484_low_4
Description: NF19484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19484_low_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 97 - 343
Target Start/End: Original strand, 4251211 - 4251457
Alignment:
| Q |
97 |
caaagaatgttgtatcaattaataaaaaaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttcc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251211 |
caaagaatgttgtatcaattaataaaaaaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttcc |
4251310 |
T |
|
| Q |
197 |
ttgtttttatctctttttggtcataccatttatctctccccttgtttcctgctgttccactccatctccagattctcttcattgtattattttataggtt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251311 |
ttgtttttatctctttttggtcataccatttatctctccccttgtttcctgttgttccactccatctccagattctcttcattgtattattttataggtt |
4251410 |
T |
|
| Q |
297 |
ctcttcaattaccaaagtttagagacgtgacaaagttgcctttgctt |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251411 |
ctcttcaattaccaaagtttagagacgtgacaaagttgcctttgctt |
4251457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 126 - 343
Target Start/End: Complemental strand, 51005434 - 51005218
Alignment:
| Q |
126 |
ggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggtcataccat |
225 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
51005434 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttt-atctctttttggtcataccat |
51005336 |
T |
|
| Q |
226 |
ttatctctccccttgtttcctgctgttccactccatctccagattctcttcattgtattattttataggttctcttcaattaccaaagtttagagacgtg |
325 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51005335 |
ttatctctccccttgttttctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtg |
51005236 |
T |
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| Q |
326 |
acaaagttgcctttgctt |
343 |
Q |
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|||||||||||||||||| |
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| T |
51005235 |
acaaagttgcctttgctt |
51005218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 126 - 343
Target Start/End: Complemental strand, 10305613 - 10305397
Alignment:
| Q |
126 |
ggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggtcataccat |
225 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
10305613 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttt-atctctttttggtgataccat |
10305515 |
T |
|
| Q |
226 |
ttatctctccccttgtttcctgctgttccactccatctccagattctcttcattgtattattttataggttctcttcaattaccaaagtttagagacgtg |
325 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10305514 |
ttatctctccccttgtttcaaactgttccactccatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtg |
10305415 |
T |
|
| Q |
326 |
acaaagttgcctttgctt |
343 |
Q |
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|||||||||||||||||| |
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| T |
10305414 |
acaaagttgcctttgctt |
10305397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 124 - 343
Target Start/End: Original strand, 4246071 - 4246289
Alignment:
| Q |
124 |
aaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggtcatacc |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
4246071 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacatgagaaaagctcaaaagcggtgatttctttgtttt-atctctttttggtcatacc |
4246169 |
T |
|
| Q |
224 |
atttatctctccccttgtttcctgctgttccactccatctccagattctcttcattgtattattttataggttctcttcaattaccaaagtttagagacg |
323 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4246170 |
atttatctctccccttgtttcctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacg |
4246269 |
T |
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| Q |
324 |
tgacaaagttgcctttgctt |
343 |
Q |
| |
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||| ||||||| |||||||| |
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| T |
4246270 |
tgagaaagttgtctttgctt |
4246289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 126 - 343
Target Start/End: Complemental strand, 13761685 - 13761469
Alignment:
| Q |
126 |
ggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggtcataccat |
225 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
13761685 |
ggaaaatgcttaacatcacgacaaaagtttcacaaatatcacacgagaaaagctcaaaagtggtgatttccttgtttt-atctctttttggtcataccat |
13761587 |
T |
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| Q |
226 |
ttatctctccccttgtttcctgctgttccactccatctccagattctcttcattgtattattttataggttctcttcaattaccaaagtttagagacgtg |
325 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
13761586 |
ttatctctccccttgtttcctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttaaagacgtg |
13761487 |
T |
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| Q |
326 |
acaaagttgcctttgctt |
343 |
Q |
| |
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||||| |||||||||||| |
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| T |
13761486 |
acaaaattgcctttgctt |
13761469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 123 - 343
Target Start/End: Complemental strand, 143219 - 142998
Alignment:
| Q |
123 |
aaaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggtcatac |
222 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
143219 |
aaaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcatatgagaaaagttcaaaagcggtgatttccttgtttt-atctctttttggtcatac |
143121 |
T |
|
| Q |
223 |
catttatctctccccttgtttcctgctgttccactccatctccagattctcttcattgtattattttatag--gttctcttcaattaccaaagtttagag |
320 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
143120 |
catttatctcttcccttgtttccagctgttccactccatctccagattctcttcattgtattattttattggtgttctcttcaattaccaaagtttagag |
143021 |
T |
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| Q |
321 |
acgtgacaaagttgcctttgctt |
343 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
143020 |
acgtgacaaagttgcctttgctt |
142998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 1814022 - 1814122
Alignment:
| Q |
124 |
aaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggtcatacc |
223 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
1814022 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagtttaaaaacggtgatttccttg-ttttatttctttttggtcatacc |
1814120 |
T |
|
| Q |
224 |
at |
225 |
Q |
| |
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|| |
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| T |
1814121 |
at |
1814122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 1814123 - 1814199
Alignment:
| Q |
267 |
gattctcttcattgtattattttataggttctcttcaattaccaaagtttagagacgtgacaaagttgcctttgctt |
343 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1814123 |
gattctctttattgtattattttattggttctctttaattaccaaagtttagagacgtgacaaagttgcatttgctt |
1814199 |
T |
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