View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19484_low_7 (Length: 235)
Name: NF19484_low_7
Description: NF19484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19484_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4251078 - 4250977
Alignment:
| Q |
1 |
taaaaacttagcgtggttgcataagtcttaatatattttttatcaacgtgaattaaagattttatgtaaatgataatgttgatgtaattgagatttcatg |
100 |
Q |
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| T |
4251078 |
taaaaacttagcgtggttgcataagtcttaatatattttttatcaacgtgaattaaagattttatgtaaatgataatgttgatgtaattgagatttcatg |
4250979 |
T |
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| Q |
101 |
gc |
102 |
Q |
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|| |
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| T |
4250978 |
gc |
4250977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 4250917 - 4250856
Alignment:
| Q |
162 |
gactatataatatatttatgattggattaggtaggatatggatttcttggaagccctaactg |
223 |
Q |
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| T |
4250917 |
gactatataatatatttatgattggattaggtaggatatggatttcttggaagtcctaactg |
4250856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4233638 - 4233568
Alignment:
| Q |
1 |
taaaaacttagcgtggttgcataagtcttaatatattt--tttatcaacgtgaattaaagattttatgtaa |
69 |
Q |
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||||||||||| |||||| || |||||||||||||||| | ||||||| ||||| ||||||||||||||| |
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| T |
4233638 |
taaaaacttagggtggttacaaaagtcttaatatattttgtatatcaacatgaatcaaagattttatgtaa |
4233568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4241577 - 4241507
Alignment:
| Q |
1 |
taaaaacttagcgtggttgcataagtcttaatatattt--tttatcaacgtgaattaaagattttatgtaa |
69 |
Q |
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||||||||||| | ||||||| |||||||||||||||| | ||||||| ||||| ||||||||||||||| |
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| T |
4241577 |
taaaaacttagggaggttgcaaaagtcttaatatatttcgtatatcaacatgaatcaaagattttatgtaa |
4241507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4241692 - 4241654
Alignment:
| Q |
1 |
taaaaacttagcgtggttgcataagtcttaatatatttt |
39 |
Q |
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||||||||||||||||||||| ||||||| ||||||||| |
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| T |
4241692 |
taaaaacttagcgtggttgcaaaagtcttcatatatttt |
4241654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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