View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_high_1 (Length: 810)

Name: NF19485_high_1
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_high_1
NF19485_high_1
[»] chr5 (1 HSPs)
chr5 (10-790)||(3570237-3571004)


Alignment Details
Target: chr5 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 10 - 790
Target Start/End: Original strand, 3570237 - 3571004
Alignment:
Q  10 gaagcataggcatccatttgaatggttcacattctctagctgtggtaacagccagaattacaatgagtcagcataaagttctaactaaaaacagaaagca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||    
T  3570237 gaagcataggcatccatttgaatggttcacattctctagctgtggtaacagccagaatt---------------------ctaactaaaaacagaaagca 3570315  T
Q  110 tgctataaatggtataacagttgggggtccataaataaaaccggtctgcactaaaattttcagactaaatataatgatctttattttgaacatcaatgga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570316 tgctataaatggtataacagttgggggtccataaataaaaccggtctgcactaaaattttcagactaaatataatgatctttattttgaacatcaatgga 3570415  T
Q  210 aaatttaattatacgtaaactattcagttttatgtctctgttggagt---ctaggcttgagcccctttttgttaagnnnnnnngacattgtataaggaga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||       |||||||||||||||||    
T  3570416 aaatttaattatacgtaaactattcagttttatgtctctgttggagtactctaggcttgagcccctttttgttaagaaaaaaagacattgtataaggaga 3570515  T
Q  307 agtatctcatccgcattccttagcatatggtcggttggtgggccaggctcgtgggtttatattagattaccattataataatgggtttgagttttgacat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570516 agtatctcatccgcattccttagcatatggtcggttggtgggccaggctcgtgggtttatattagattaccattataataatgggtttgagttttgacat 3570615  T
Q  407 tgattcatttcaatactgtacaaatatatactgtagtagtaattgtttagtgtcgtaatattattttggaccaaccaa-ccagagacagcgtgaggttac 505  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3570616 tgatacatttcaatactgtacaaatatatactgtagtagtaattgtttagtgtcgtaatattattttggaccaaccaaaccagagacagcgtgaggttac 3570715  T
Q  506 tccaacagaataacaattattatttctctagaaacctttaaatctattgtcttgtctggtaataatatatttgtactttttgaagggcacctgcaactgc 605  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  3570716 tccaacagaataacaattattatttctctagaaacctttaattctattgtcttgtctggtaataatatatttgtactttttgagggtcacctgcaactgc 3570815  T
Q  606 aataatgttgtggagtggaatggtgtggtgcattcttcagattgtttggccgcacggtaattcagtgagccgtttccctctaggctcaatagtgtcgaag 705  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  3570816 aataatgttgtggagtggagtggtgtggtgcattcttcagattgtttggccgctcggtaattcagtgagccgtttccctctgggctcaatagcgtcgaag 3570915  T
Q  706 accttttaggtttaccggagttgtgtttggttttaatctgtttgtt----catccggtcattagagtgccttcgtcctttaggctcgat 790  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  3570916 accttttaggtttaccggaattgtgtttggtattaatctgtttgttcatccatccggtcattagagtgccttcgtcctttaggctcgat 3571004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University