View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19485_high_11 (Length: 468)
Name: NF19485_high_11
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 452
Target Start/End: Original strand, 27315483 - 27315925
Alignment:
| Q |
10 |
acatcatcaacctttatcccttcaaaacacttccttgcactaacgaaacacccgcatgaagagtaaaaatccaccaaagcattagcaacaaaaacattag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27315483 |
acatcctcaacctttatcccttcaaaacacttccttgcactaacgaaacacccgcatgaagagtaaaaatccaccaaagcattagcaacaaaaacattat |
27315582 |
T |
|
| Q |
110 |
attccacaaaacccatcttcaaaacacagctatgaatcatctccccttcatgaaaccttctcttactactacaccccctaagcaaataacaaaaagtaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27315583 |
attccacaaaacccatcttcaaaacacagctatgaatcatctccccttcatgaaaccttctcttactactacaccccctaagcaaataacaaaaagtaac |
27315682 |
T |
|
| Q |
210 |
cccatttgcttctacaccttcaaaacacatcctagcgtaaaatccaagcaactcttcaacttccacacaacccatttcacaaaacccacgaaacatcaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27315683 |
cccatttgcttctacaccttcaaaacacatcctagcgtaaaatccaagcaactcttcaacttccacacaacccatttcacaaaacccacgaaacatcaca |
27315782 |
T |
|
| Q |
310 |
ttccacacacccaaatttctctctgacaactcatcaaacaacttcagtgcaaccccacttagcccaagattcatatagaacccaacaagtgcaccaccaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27315783 |
ttccacacacccaaatttctctctgacaactcatcaaacaacttcagtgcaaccccacttagcccaagattcatatagaacccaacaagtgcaccaccaa |
27315882 |
T |
|
| Q |
410 |
caaacacattattcaaaaatccaaactttacaaccctagaatg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27315883 |
caaacacattattcaaaaatccaaactttacaaccctagaatg |
27315925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University