View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_high_19 (Length: 362)

Name: NF19485_high_19
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_high_19
NF19485_high_19
[»] chr2 (9 HSPs)
chr2 (152-281)||(29455275-29455407)
chr2 (57-137)||(29455477-29455557)
chr2 (57-137)||(43564267-43564347)
chr2 (152-197)||(43564151-43564196)
chr2 (97-137)||(7574085-7574125)
chr2 (97-137)||(41646702-41646742)
chr2 (97-137)||(16668680-16668720)
chr2 (57-87)||(7574014-7574044)
chr2 (57-87)||(16668609-16668639)
[»] chr8 (6 HSPs)
chr8 (57-137)||(918909-918989)
chr8 (97-137)||(8150485-8150525)
chr8 (97-137)||(10186462-10186502)
chr8 (97-137)||(11428136-11428176)
chr8 (156-189)||(919075-919108)
chr8 (97-133)||(20172070-20172106)
[»] scaffold0516 (1 HSPs)
scaffold0516 (97-137)||(3355-3395)
[»] chr7 (7 HSPs)
chr7 (97-137)||(5768058-5768098)
chr7 (97-137)||(25419569-25419609)
chr7 (97-137)||(39066864-39066904)
chr7 (97-137)||(47233816-47233856)
chr7 (57-87)||(5767987-5768017)
chr7 (57-87)||(25419498-25419528)
chr7 (97-133)||(44393780-44393816)
[»] chr6 (3 HSPs)
chr6 (97-137)||(13433447-13433487)
chr6 (97-137)||(16712103-16712143)
chr6 (57-87)||(13433376-13433406)
[»] chr5 (4 HSPs)
chr5 (97-137)||(36991151-36991191)
chr5 (97-137)||(21605061-21605101)
chr5 (101-137)||(37301986-37302022)
chr5 (57-87)||(36991232-36991262)
[»] chr4 (13 HSPs)
chr4 (97-137)||(2504995-2505035)
chr4 (97-137)||(46092411-46092451)
chr4 (97-137)||(46134936-46134976)
chr4 (97-137)||(53830499-53830539)
chr4 (97-137)||(20036391-20036431)
chr4 (97-137)||(34737793-34737833)
chr4 (97-137)||(5430821-5430861)
chr4 (57-87)||(2504924-2504954)
chr4 (57-87)||(34737725-34737755)
chr4 (57-87)||(46092492-46092522)
chr4 (57-87)||(46135017-46135047)
chr4 (57-87)||(53830428-53830458)
chr4 (97-137)||(2500638-2500678)
[»] chr3 (5 HSPs)
chr3 (97-137)||(35870451-35870491)
chr3 (97-137)||(48266372-48266412)
chr3 (97-137)||(52349834-52349874)
chr3 (57-87)||(48266453-48266483)
chr3 (57-87)||(52349915-52349945)
[»] chr1 (6 HSPs)
chr1 (97-137)||(13786337-13786377)
chr1 (97-137)||(22912522-22912562)
chr1 (97-137)||(25807766-25807806)
chr1 (97-137)||(23726019-23726058)
chr1 (57-87)||(13786418-13786448)
chr1 (58-87)||(22912455-22912484)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 152 - 281
Target Start/End: Complemental strand, 29455407 - 29455275
Alignment:
Q  152 catataataagtgttgtcaattattaatcaaaaattaaggaaatgannnnnnn-gggttgtaaatgggagttacaaatgtcagccgca--catgtatttg 248  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||  ||||||||||    
T  29455407 catataataagtgttatcaattattaatcaaaaattaaggaaatgattttttttgggttgtaaatgggagttacaaatgtcagccgcatacatgtatttg 29455308  T
Q  249 taattatgtgtaactgacaatattaggagacac 281  Q
    ||  |||||||||||||||||||||||||||||    
T  29455307 tatatatgtgtaactgacaatattaggagacac 29455275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 29455557 - 29455477
Alignment:
Q  57 gataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||    
T  29455557 gataacataagcaacatatatataagcttagaaaaaaatgaagaggattaattaagaatatgaataattttaaaatgtaac 29455477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 43564347 - 43564267
Alignment:
Q  57 gataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||||||    
T  43564347 gataacataagcaacatatatataagcttagaaaaaaatgaaaaggattgattaagaatatgaataattttaaaatgtaac 43564267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 43564196 - 43564151
Alignment:
Q  152 catataataagtgttgtcaattattaatcaaaaattaaggaaatga 197  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  43564196 catataataagtgttgtcaattattaatcaaaaattaaggtaatga 43564151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 7574085 - 7574125
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7574085 aagaggattgattaagaatatgaataattttaaaatgtaac 7574125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 41646702 - 41646742
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41646702 aagaggattgattaagaatatgaataattttaaaatgtaac 41646742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 16668680 - 16668720
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  16668680 aagaggattgatcaagaatatgaataattttaaaatgtaac 16668720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 7574014 - 7574044
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  7574014 gataacataagcaacatatatataagcttag 7574044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 16668609 - 16668639
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  16668609 gataacataagcaacatatatataagcttag 16668639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 918909 - 918989
Alignment:
Q  57 gataacataagcaacatatatataagcttagnnnnnnntgaagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    ||||||||| |||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  918909 gataacatatgcaatatatatataagcttagaaaaaaatgaagaggattgattaagaatatgaataattttaaaatgtaac 918989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 8150485 - 8150525
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  8150485 aagaggactgattaagaatatgaataattttaaaatgtaac 8150525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 10186502 - 10186462
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  10186502 aagaggattgattaagaatatgaacaattttaaaatgtaac 10186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 11428136 - 11428176
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  11428136 aagatgattgactaagaatatgaataattttaaaatgtaac 11428176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 919075 - 919108
Alignment:
Q  156 taataagtgttgtcaattattaatcaaaaattaa 189  Q
    |||||||||||||||||||| |||||||||||||    
T  919075 taataagtgttgtcaattatcaatcaaaaattaa 919108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 20172106 - 20172070
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatg 133  Q
    |||| |||||| |||||||||||||||||||||||||    
T  20172106 aagatgattgactaagaatatgaataattttaaaatg 20172070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 3395 - 3355
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3395 aagaggattgattaagaatatgaataattttaaaatgtaac 3355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 5768058 - 5768098
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5768058 aagaggattgattaagaatatgaataattttaaaatgtaac 5768098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 25419569 - 25419609
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25419569 aagaggattgattaagaatatgaataattttaaaatgtaac 25419609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 39066864 - 39066904
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39066864 aagaggattgattaagaatatgaataattttaaaatgtaac 39066904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 47233816 - 47233856
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47233816 aagaggattgattaagaatatgaataattttaaaatgtaac 47233856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 5767987 - 5768017
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  5767987 gataacataagcaacatatatataagcttag 5768017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 25419498 - 25419528
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  25419498 gataacataagcaacatatatataagcttag 25419528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 44393816 - 44393780
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatg 133  Q
    |||| |||||| |||||||||||||||||||||||||    
T  44393816 aagatgattgactaagaatatgaataattttaaaatg 44393780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 13433447 - 13433487
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13433447 aagaggattgattaagaatatgaataattttaaaatgtaac 13433487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 16712103 - 16712143
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  16712103 aagatgattgattaagaatatgaataattttaaaatgtaac 16712143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 13433376 - 13433406
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  13433376 gataacataagcaacatatatataagcttag 13433406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 36991191 - 36991151
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36991191 aagaggattgattaagaatatgaataattttaaaatgtaac 36991151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 21605061 - 21605101
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21605061 aagaggattgattaagaatatgaataattttaaaatttaac 21605101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 37301986 - 37302022
Alignment:
Q  101 ggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  37301986 ggattgattaagaatatgaataattttaaaatgtaac 37302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 36991262 - 36991232
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  36991262 gataacataagcaacatatatataagcttag 36991232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 2504995 - 2505035
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2504995 aagaggattgattaagaatatgaataattttaaaatgtaac 2505035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 46092451 - 46092411
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46092451 aagaggattgattaagaatatgaataattttaaaatgtaac 46092411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 46134976 - 46134936
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46134976 aagaggattgattaagaatatgaataattttaaaatgtaac 46134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 53830499 - 53830539
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  53830499 aagaggattgattaagaatatgaataattttaaaatgtaac 53830539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 20036431 - 20036391
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  20036431 aagaggattgattaagaatatgattaattttaaaatgtaac 20036391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 34737793 - 34737833
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  34737793 aagaggattgatcaagaatatgaataattttaaaatgtaac 34737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 5430861 - 5430821
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  5430861 aagatgattgactaagaatatgaataattttaaaatgtaac 5430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 2504924 - 2504954
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  2504924 gataacataagcaacatatatataagcttag 2504954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 34737725 - 34737755
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  34737725 gataacataagcaacatatatataagcttag 34737755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 46092522 - 46092492
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  46092522 gataacataagcaacatatatataagcttag 46092492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 46135047 - 46135017
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  46135047 gataacataagcaacatatatataagcttag 46135017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 53830428 - 53830458
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  53830428 gataacataagcaacatatatataagcttag 53830458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 2500638 - 2500678
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||| |||||||  |||||||||||||||||||    
T  2500638 aagaggattgatcaagaatacaaataattttaaaatgtaac 2500678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 35870491 - 35870451
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35870491 aagaggattgattaagaatatgaataattttaaaatgtaac 35870451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 48266412 - 48266372
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48266412 aagaggattgattaagaatatgaataattttaaaatgtaac 48266372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 52349874 - 52349834
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  52349874 aagaggattgattaagaatataaataattttaaaatgtaac 52349834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 48266483 - 48266453
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  48266483 gataacataagcaacatatatataagcttag 48266453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 52349945 - 52349915
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  52349945 gataacataagcaacatatatataagcttag 52349915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 13786377 - 13786337
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13786377 aagaggattgattaagaatatgaataattttaaaatgtaac 13786337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 22912522 - 22912562
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22912522 aagaggattgattaagaatatgaataattttaaaatgtaac 22912562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 25807766 - 25807806
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25807766 aagaggattgattaagaatatgaataattttaaaatgtaac 25807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 23726019 - 23726058
Alignment:
Q  97 aagaggattgattaagaatatgaataattttaaaatgtaac 137  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  23726019 aagaggattgattaagaatatgaataa-tttaaaatgtaac 23726058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 87
Target Start/End: Complemental strand, 13786448 - 13786418
Alignment:
Q  57 gataacataagcaacatatatataagcttag 87  Q
    |||||||||||||||||||||||||||||||    
T  13786448 gataacataagcaacatatatataagcttag 13786418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 22912455 - 22912484
Alignment:
Q  58 ataacataagcaacatatatataagcttag 87  Q
    ||||||||||||||||||||||||||||||    
T  22912455 ataacataagcaacatatatataagcttag 22912484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University