View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_high_22 (Length: 345)
Name: NF19485_high_22
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 28168693 - 28168412
Alignment:
| Q |
16 |
ataggagacatgatggatgaatttaagaagtttgaagaagctaggaaacgaaagttgaatacaccatgtaaagacatccttgttaaaaat---------- |
105 |
Q |
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| T |
28168693 |
ataggagacatgatggatgaatttaagaagtttgaagaagctaggaaaagaaagttgaatacaccatgtaaggacatccttgttagaaattcgaatgtta |
28168594 |
T |
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| Q |
106 |
-----gtaataacttgtatatggaaggtcgtcttatgcagcttaaatcctccatgtcgtccattctgaattactttctttccttgtgcaaaataatgttg |
200 |
Q |
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| T |
28168593 |
gaaatgtaataacttgtatatggaaggtcgtcttatgtagcttaaatcctccatgtcgtccattccgaattactttctttccttgtgcaaaataatgttg |
28168494 |
T |
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| Q |
201 |
attggtggtcatgaagacttgaaatcaatgatgcttactaagttaaaaggatataccaggccagcttatgttccagattgggatagt |
287 |
Q |
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| T |
28168493 |
attggtggtcatgaagacttgaaatcaacgatgcttactaagttaaaaggatata-----ccagcttatgttccagatcgggatagt |
28168412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 102 - 256
Target Start/End: Complemental strand, 28173305 - 28173151
Alignment:
| Q |
102 |
aaatgtaataacttgtatatggaaggtcgtcttatgcagcttaaatcctccatgtcgtccattctgaattactttctttccttgtgcaaaataatgttga |
201 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||| |||||||||||||| || || ||||||||||| |
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| T |
28173305 |
aaatgtaataacttgtatatggaaggtcgccttatgtagcttaaatcatccatgttgtccattccaaattactttctttctttttgtaaaataatgttcg |
28173206 |
T |
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| Q |
202 |
ttggtggtcatgaagacttgaaatcaatgatgcttactaagttaaaaggatatac |
256 |
Q |
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| T |
28173205 |
ttggtggtcgtgaagacttgaaatcaacgatgcttgctcagttaaaaagatatac |
28173151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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