View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_high_23 (Length: 343)

Name: NF19485_high_23
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_high_23
NF19485_high_23
[»] chr1 (3 HSPs)
chr1 (142-228)||(29442305-29442391)
chr1 (261-332)||(29442182-29442253)
chr1 (21-70)||(29442464-29442513)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 29442391 - 29442305
Alignment:
Q  142 cttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttattatgatt 228  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29442391 cttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttattatgatt 29442305  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 29442253 - 29442182
Alignment:
Q  261 gagtaactaataatggtggaacattccctcaatttgcctaaagaaaaaatggtggaacctatttaataatat 332  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29442253 gagtaactaataatgggggaaccttccctcaatttccctaaagaaaaaatggtggaacctatttaataatat 29442182  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 29442513 - 29442464
Alignment:
Q  21 ttagggtttttcctttcttcctctccatgtacgacccaaatgcaacacag 70  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29442513 ttagggtttttcctttcttcctctccttgtacgacccaaatgcaacacag 29442464  T

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