View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_high_28 (Length: 290)
Name: NF19485_high_28
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 2693410 - 2693136
Alignment:
| Q |
1 |
tagaagaaacaacttagacctagaaagagtgaggcaacattatttttgttgatgatgctctcaacatacaaacgcgtagcttcttgtacattgttgttct |
100 |
Q |
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| T |
2693410 |
tagaagaaacaacttagacctagaaagagtgaggcaacattatttttgttgatgatgctctcaacatacaaacgcgtagcttcttgtacattgttgttct |
2693311 |
T |
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| Q |
101 |
atattttcctgtgtttctgttcagtgatctcgcaaggtgatcctatcaaacaaggtgattttatcagagacgaagatggtgaagttttattctcagatgg |
200 |
Q |
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| T |
2693310 |
atattttcctgtgtttctgttcagtgatctcgcaaggtgatcctatcaaacaaggtgactttatcagagacgaagatggtgaagttttattctcagatgg |
2693211 |
T |
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| Q |
201 |
gcacaacttcgtaatgggtttctttggttttcaagactcttcttctcgttatgttggaatttggtactacaacat |
275 |
Q |
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| T |
2693210 |
gcacaacttcgtaatgggtttctttggttttcaagactcttcttctcgttatgttggaatttggtactacaacat |
2693136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 2700969 - 2700838
Alignment:
| Q |
144 |
tatcaaacaaggtgattttatcagagacgaagatggtgaagttttattctcagatgggcacaacttcgtaatgggtttctttggttttcaagactcttct |
243 |
Q |
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||||||||| ||||| || ||||||||| |||| |||||||||||| |||||||||| |||||||||| |||||||||||||| ||| || | |||||| |
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| T |
2700969 |
tatcaaacatggtgaattcatcagagacaaagaaggtgaagttttagtctcagatggctacaacttcgtgatgggtttctttgggtttgaaaattcttct |
2700870 |
T |
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| Q |
244 |
tctcgttatgttggaatttggtactacaacat |
275 |
Q |
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| T |
2700869 |
tcacgttacgttggtatttggtactacaacat |
2700838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 14522344 - 14522213
Alignment:
| Q |
144 |
tatcaaacaaggtgattttatcagagacgaagatggtgaagttttattctcagatgggcacaacttcgtaatgggtttctttggttttcaagactcttct |
243 |
Q |
| |
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|||||||||||||||| || | ||||| |||| ||||| ||||||||||||||||| |||||| | ||||||||||||||||| |||||||| |
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| T |
14522344 |
tatcaaacaaggtgatattgtaagagatcaagaaggtgatgttttattctcagatggtttcaactttgctatgggtttctttggtttcggcaactcttct |
14522245 |
T |
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| Q |
244 |
tctcgttatgttggaatttggtactacaacat |
275 |
Q |
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||||||||||| || ||||||||||| ||||| |
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| T |
14522244 |
tctcgttatgtcggtatttggtactataacat |
14522213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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