View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_high_32 (Length: 263)
Name: NF19485_high_32
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 30955637 - 30955872
Alignment:
| Q |
18 |
agacacaatcttaacccttctccaaa-------acagtatacaattgtactcaacacattttattttgaagcagcaataaggttacacataagagaaata |
110 |
Q |
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| T |
30955637 |
agacacaatcttaacccttctccaaaacacaaaacagtatacaattgtactcaacacattttattttgaagcagcaataaggttacacataagagaaatt |
30955736 |
T |
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| Q |
111 |
aactaccccaaaactatgcccttagacaatccataaggccaccattctatatttgaaaagttagcttcacaatatatcctacttgttcatatagttttac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |
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| T |
30955737 |
aactaccccaaaactatgcccttagacaatccataaggccaccattctatatttgaaaagtttgcttcacaatatatcctacttgttcatatagctatac |
30955836 |
T |
|
| Q |
211 |
agtttttacagttagtgagaaaccactcctctatat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30955837 |
agtttttacagttagtgagaaaccactcctctatat |
30955872 |
T |
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