View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_high_39 (Length: 236)

Name: NF19485_high_39
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_high_39
NF19485_high_39
[»] chr2 (4 HSPs)
chr2 (1-233)||(40030119-40030339)
chr2 (150-233)||(30925655-30925738)
chr2 (150-233)||(30916522-30916605)
chr2 (168-233)||(30905819-30905884)
[»] chr8 (3 HSPs)
chr8 (151-224)||(29211277-29211350)
chr8 (150-233)||(29312538-29312621)
chr8 (150-233)||(29255319-29255402)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 40030119 - 40030339
Alignment:
Q  1 ctataaggtaaattttctacacagattactgaatcgacctta--------tggataatttggtaggtactaggtacatatttgtttctaagatgtgtttt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||       |||||||||||||||||||||||     
T  40030119 ctataaggtaaattttctacacagattactgaatcgaccttagaagattatggataatttggtagatac-------atatttgtttctaagatgtgttt- 40030210  T
Q  93 ctgttaatgattatgtttgtgttactgaatcaacctgaattccttaagttttgaatgtgtgtaggatcaaaagagtgggaattggcagcttgaatatgaa 192  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40030211 ------------atgtttgtgttactgaatcaacctgaattccttaagttttgaatgtgtgtaggatcaaaagagtgggaattggcagcttgaatatgaa 40030298  T
Q  193 tctggaaatgtaattggatattggccatcctctttgttcac 233  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40030299 tctggaaatgtaattggatattggccatcctctttgttcac 40030339  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 30925738 - 30925655
Alignment:
Q  150 tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcac 233  Q
    |||| |||||||||| | ||||||||||  ||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  30925738 tgtgcaggatcaaaaaactgggaattggtggcttgaatatggatctggaaacataattggatattggccatcctctttgttcac 30925655  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 30916605 - 30916522
Alignment:
Q  150 tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcac 233  Q
    ||||||||||  ||| | ||||||||||  ||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  30916605 tgtgtaggatagaaaaaatgggaattggtggcttgaatatggatctggaaacataattggatattggccatcctctttgttcac 30916522  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 30905884 - 30905819
Alignment:
Q  168 tgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcac 233  Q
    ||||||||||  |||||||| || |||||||||  |||||||||||||||||||||||||||||||    
T  30905884 tgggaattggtggcttgaatttggatctggaaacataattggatattggccatcctctttgttcac 30905819  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 29211350 - 29211277
Alignment:
Q  151 gtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctc 224  Q
    |||||||||| ||||  ||||||||||  ||||||||||| |||||||||  ||||||||||||||||||||||    
T  29211350 gtgtaggatccaaagcatgggaattggtggcttgaatatggatctggaaacttaattggatattggccatcctc 29211277  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 29312538 - 29312621
Alignment:
Q  150 tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcac 233  Q
    ||||||||||| ||| ||||||||||||  ||||||||||| |||||||||| |  |||| ||||||||| || | ||||||||    
T  29312538 tgtgtaggatccaaatagtgggaattggtggcttgaatatggatctggaaattttcttggctattggccagccaccttgttcac 29312621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 29255319 - 29255402
Alignment:
Q  150 tgtgtaggatcaaaagagtgggaattggcagcttgaatatgaatctggaaatgtaattggatattggccatcctctttgttcac 233  Q
    ||||||||||| || || ||||||||||  ||||||||||| |  ||||||    |||||||| ||||||||||||||||||||    
T  29255319 tgtgtaggatccaaggaatgggaattggtggcttgaatatggacttggaaaccctattggatactggccatcctctttgttcac 29255402  T

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