View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_high_40 (Length: 235)

Name: NF19485_high_40
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_high_40
NF19485_high_40
[»] scaffold0110 (3 HSPs)
scaffold0110 (4-221)||(11457-11674)
scaffold0110 (4-221)||(19194-19411)
scaffold0110 (1-62)||(27069-27130)
[»] chr4 (7 HSPs)
chr4 (91-209)||(4873081-4873199)
chr4 (124-194)||(25411617-25411688)
chr4 (93-209)||(43136850-43136969)
chr4 (137-192)||(32430545-32430600)
chr4 (140-186)||(24680789-24680835)
chr4 (152-194)||(40339487-40339529)
chr4 (175-209)||(48292389-48292423)
[»] chr7 (4 HSPs)
chr7 (88-221)||(37701271-37701406)
chr7 (137-194)||(5617891-5617948)
chr7 (145-204)||(10385098-10385157)
chr7 (140-186)||(7183973-7184019)
[»] chr1 (4 HSPs)
chr1 (91-213)||(30018603-30018726)
chr1 (137-186)||(43856362-43856411)
chr1 (136-186)||(42486435-42486485)
chr1 (137-186)||(31142489-31142538)
[»] chr6 (3 HSPs)
chr6 (107-221)||(30351461-30351575)
chr6 (137-213)||(22996984-22997060)
chr6 (137-213)||(23791341-23791417)
[»] chr5 (9 HSPs)
chr5 (137-213)||(14613573-14613649)
chr5 (137-191)||(30513855-30513909)
chr5 (137-191)||(30554195-30554249)
chr5 (138-194)||(12075922-12075978)
chr5 (136-186)||(30511831-30511881)
chr5 (136-186)||(30552171-30552221)
chr5 (137-213)||(6706297-6706373)
chr5 (106-182)||(12050279-12050354)
chr5 (93-129)||(39525656-39525692)
[»] chr2 (9 HSPs)
chr2 (99-209)||(9745382-9745493)
chr2 (137-185)||(4984000-4984048)
chr2 (145-185)||(37629600-37629640)
chr2 (137-191)||(20897393-20897447)
chr2 (116-186)||(25297318-25297388)
chr2 (139-201)||(38070043-38070105)
chr2 (137-186)||(12232343-12232392)
chr2 (137-169)||(8842415-8842447)
chr2 (97-186)||(14251104-14251195)
[»] chr8 (6 HSPs)
chr8 (154-200)||(41584151-41584197)
chr8 (137-185)||(28798970-28799018)
chr8 (91-168)||(4252625-4252702)
chr8 (137-221)||(25939313-25939397)
chr8 (150-186)||(26423772-26423808)
chr8 (137-209)||(9040875-9040947)
[»] chr3 (2 HSPs)
chr3 (154-213)||(26452824-26452883)
chr3 (137-186)||(31070668-31070717)
[»] scaffold0197 (1 HSPs)
scaffold0197 (137-186)||(26023-26072)


Alignment Details
Target: scaffold0110 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 11674 - 11457
Alignment:
Q  4 aaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatatgtgtacctctaaactcagatgcttgcnnnnnnnacgtccattgtttcct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||       | |||||||||||| |    
T  11674 aaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatgtgtgtacctctaaactcggatgcttgcttttttgatgtccattgtttctt 11575  T
Q  104 aaaaatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttgg 203  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11574 aaaaatatatgaaaatgaccaaaaacttaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggaatgtttttgg 11475  T
Q  204 tcattttcatatatttct 221  Q
    |||||||||||| |||||    
T  11474 tcattttcatatgtttct 11457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 19411 - 19194
Alignment:
Q  4 aaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatatgtgtacctctaaactcagatgcttgcnnnnnnnacgtccattgtttcct 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||       | |||||||||||| |    
T  19411 aaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatgtgtgtacctctaaactcggatgcttgcttttttgatgtccattgtttctt 19312  T
Q  104 aaaaatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttgg 203  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19311 aaaaatatatgaaaatgaccaaaaacttaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggaatgtttttgg 19212  T
Q  204 tcattttcatatatttct 221  Q
    |||||||||||| |||||    
T  19211 tcattttcatatgtttct 19194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27130 - 27069
Alignment:
Q  1 tgtaaatgtccatttggcaatgtatcttaatcatgggacccttacatggcatatgtgtacct 62  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||  ||||||||    
T  27130 tgtaaatgtacatttggcaatgtgtcataatcatgggacccttacatggcatgcgtgtacct 27069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 209
Target Start/End: Complemental strand, 4873199 - 4873081
Alignment:
Q  91 tccattgtttcctaaaaatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagct 190  Q
    |||||| ||||||||||| | ||||||||||  ||||||| |    |||||||||||| || |||||||||||||||||| || |||||||||||| |||    
T  4873199 tccattctttcctaaaaacacatgaaaatgactaaaaacccagtggtagttaactaccatcagttttctagttataagtcagcggtagttaactaccgct 4873100  T
Q  191 ggagtgtttttggtcattt 209  Q
    | |||||||||| ||||||    
T  4873099 gaagtgtttttgatcattt 4873081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 25411617 - 25411688
Alignment:
Q  124 aaaaacctaacaatagttaactaccgtcggtttt-ctagttataagtcggcagtagttaactacagctggag 194  Q
    ||||| |||||  |||||||||||||| |||||| ||||||||||||| || |||||||||||| |||||||    
T  25411617 aaaaaactaacggtagttaactaccgttggtttttctagttataagtctgcggtagttaactaccgctggag 25411688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 43136969 - 43136850
Alignment:
Q  93 cattgtttcctaaaaatatatgaaaatgatcaaa---aacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagc 189  Q
    |||| ||||||| ||||| |||||||||| ||||   || | |||  ||||||||||||| || ||||||| ||||||||||||  ||||||||||| ||    
T  43136969 cattatttcctagaaatacatgaaaatgaccaaagaaaatccaactgtagttaactaccgccgtttttctacttataagtcggcgatagttaactaccgc 43136870  T
Q  190 tggagtgtttttggtcattt 209  Q
      |||| ||||| |||||||    
T  43136869 cagagtatttttagtcattt 43136850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 32430600 - 32430545
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctgg 192  Q
    ||||||||||||| || ||||||||||||||||| |  |||||||||||| |||||    
T  32430600 tagttaactaccgccgattttctagttataagtctgtggtagttaactaccgctgg 32430545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 24680835 - 24680789
Alignment:
Q  140 ttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    |||||||||||||||| |||||||||||| | || ||||||||||||    
T  24680835 ttaactaccgtcggttctctagttataagccagcggtagttaactac 24680789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 40339529 - 40339487
Alignment:
Q  152 ggttttctagttataagtcggcagtagttaactacagctggag 194  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||    
T  40339529 ggttttctagttataagtcagcaatagttaactaccgctggag 40339487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 48292389 - 48292423
Alignment:
Q  175 gtagttaactacagctggagtgtttttggtcattt 209  Q
    |||||||||||| ||||||||||||||||||||||    
T  48292389 gtagttaactaccgctggagtgtttttggtcattt 48292423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 37701406 - 37701271
Alignment:
Q  88 acgtccattgtttcctaaaaatatatgaaaatgatcaaaaacct--aacaatagttaactaccgtcggttttctagttataagtcggcagtagttaacta 185  Q
    |||| ||||||||| |||||||| ||| |||| ||||||||  |  |||  |||||||||||||||| |||| |||||||||||| || |||||||||||    
T  37701406 acgttcattgtttcttaaaaatacatggaaattatcaaaaaaattcaacggtagttaactaccgtcgattttttagttataagtcagcggtagttaacta 37701307  T
Q  186 cagctggagtgtttttggtcattttcatatatttct 221  Q
    || | | |||||||||| |||||| ||||| |||||    
T  37701306 caaccgaagtgtttttgatcatttccatatgtttct 37701271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 5617948 - 5617891
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggag 194  Q
    ||||||| ||||| |||||||||||||||||| | || |||||||||||| |||||||    
T  5617948 tagttaattaccgccggttttctagttataagccagcggtagttaactaccgctggag 5617891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 10385098 - 10385157
Alignment:
Q  145 taccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggt 204  Q
    |||||||||||||||||||||||||| |  |||||||| ||| | ||||||||| |||||    
T  10385098 taccgtcggttttctagttataagtcaggggtagttaattaccgttggagtgttattggt 10385157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 7184019 - 7183973
Alignment:
Q  140 ttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    ||||||||||||| ||||||| |||||||||  ||||||||||||||    
T  7184019 ttaactaccgtcgattttctaattataagtcaccagtagttaactac 7183973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 30018726 - 30018603
Alignment:
Q  91 tccattgtttccta-aaaatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagc 189  Q
    |||||||||||||| |||| | ||| |||||| |||||||| |||  ||||||||||||| || |||||||||||||||   ||  ||||||||||| ||    
T  30018726 tccattgtttcctagaaaacacatggaaatgaccaaaaacccaacggtagttaactaccgccgattttctagttataagcacgcgatagttaactaccgc 30018627  T
Q  190 tggagtgtttttggtcattttcat 213  Q
    | ||||||||||| ||||||||||    
T  30018626 ttgagtgtttttgatcattttcat 30018603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 43856362 - 43856411
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    |||||| ||||||||||||||||||||||||||| || ||| ||||||||    
T  43856362 tagttacctaccgtcggttttctagttataagtcagcggtaattaactac 43856411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 42486485 - 42486435
Alignment:
Q  136 atagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    |||||||||| | | |||||||||||||||||| | |||||||||||||||    
T  42486485 atagttaactgctgccggttttctagttataagccagcagtagttaactac 42486435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 31142489 - 31142538
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    |||||||||| ||||||||||| |||||||||| ||  ||||||||||||    
T  31142489 tagttaactaacgtcggttttccagttataagttggtggtagttaactac 31142538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 30351575 - 30351461
Alignment:
Q  107 aatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggtca 206  Q
    ||||||||||||||| ||||||   | |  |||||| |||  |||||||||||||||||||||  | ||||||||||||| | ||| |||||||||||||    
T  30351575 aatatatgaaaatgaccaaaaattcagcggtagttagctagtgtcggttttctagttataagttagaagtagttaactaccgttggggtgtttttggtca 30351476  T
Q  207 ttttcatatatttct 221  Q
    ||||||||| |||||    
T  30351475 ttttcatatgtttct 30351461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 22996984 - 22997060
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggtcattttcat 213  Q
    |||||||||||||||||||||||||||||||    |  |||||||||||| |||| ||| |||||||||||||||||    
T  22996984 tagttaactaccgtcggttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcat 22997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 23791417 - 23791341
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggtcattttcat 213  Q
    |||||||||||||||||||||||||||||||    |  |||||||||||| |||| ||| |||||||||||||||||    
T  23791417 tagttaactaccgtcggttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcat 23791341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 14613649 - 14613573
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggtcattttcat 213  Q
    ||||||||||||| || ||||||||||||||| | ||||| | ||||||| | ||||||||||||||| ||||||||    
T  14613649 tagttaactaccgccgattttctagttataagccagcagtggctaactaccgttggagtgtttttggttattttcat 14613573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 30513909 - 30513855
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctg 191  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||||| ||||    
T  30513909 tagttaactaccgtcagttttctagttataagtcagcggtagttaactactgctg 30513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 30554249 - 30554195
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctg 191  Q
    ||||||||||||||| |||||||||||||||||| || |||||||||||| ||||    
T  30554249 tagttaactaccgtcagttttctagttataagtcagcggtagttaactactgctg 30554195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 12075978 - 12075922
Alignment:
Q  138 agttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggag 194  Q
    |||||||| | | |||||||||||||||||||| || |||||||||||| |||||||    
T  12075978 agttaactgctgccggttttctagttataagtcagcggtagttaactaccgctggag 12075922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 30511831 - 30511881
Alignment:
Q  136 atagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    |||||||||| | |||| ||||||||||||||| | |||||||||||||||    
T  30511831 atagttaactgctgtcgattttctagttataagccagcagtagttaactac 30511881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 30552171 - 30552221
Alignment:
Q  136 atagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    |||||||||| | |||| ||||||||||||||| | |||||||||||||||    
T  30552171 atagttaactgctgtcgattttctagttataagccagcagtagttaactac 30552221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 6706373 - 6706297
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggtcattttcat 213  Q
    ||||||||||| | |  |||| ||||||||||||  | |||||||||||| |||| | |||||||||| ||||||||    
T  6706373 tagttaactactgccaattttttagttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcat 6706297  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 12050354 - 12050279
Alignment:
Q  106 aaatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaa 182  Q
    ||||||||| |||| | ||||||||||||   |||||| |||||||||||||||| ||||||||  || ||||||||    
T  12050354 aaatatatggaaataaccaaaaacctaacgc-agttaattaccgtcggttttctaattataagttagcggtagttaa 12050279  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 39525692 - 39525656
Alignment:
Q  93 cattgtttcctaaaaatatatgaaaatgatcaaaaac 129  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  39525692 cattgtttcttaaaaatacatgaaaatgatcaaaaac 39525656  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 9745493 - 9745382
Alignment:
Q  99 ttcctaaaaatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggag-tgt 197  Q
    ||||||||||||||||||||||| |||||||  | |  ||||||||||||| || |||||    |||||||| ||||||||||||||| || |||| | |    
T  9745493 ttcctaaaaatatatgaaaatgaccaaaaactcagcggtagttaactaccgccgattttcctaatataagtcagcagtagttaactaccgccggagtttt 9745394  T
Q  198 ttttggtcattt 209  Q
    ||||||||||||    
T  9745393 ttttggtcattt 9745382  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 4984000 - 4984048
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaacta 185  Q
    |||||||||||||||| ||||||||||||||||  || |||||||||||    
T  4984000 tagttaactaccgtcgattttctagttataagttagcggtagttaacta 4984048  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 37629600 - 37629640
Alignment:
Q  145 taccgtcggttttctagttataagtcggcagtagttaacta 185  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  37629600 taccgtcggttttctagttataagtcagcggtagttaacta 37629640  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 20897393 - 20897447
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctg 191  Q
    ||||||| ||| |||||||||||| ||||||||| ||||||||| ||||| ||||    
T  20897393 tagttaaatactgtcggttttctaattataagtcagcagtagtttactaccgctg 20897447  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 25297388 - 25297318
Alignment:
Q  116 aaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    ||||||| ||||| | |||  ||||||||| | ||| |||||||||||||||||| || ||||||||||||    
T  25297388 aaatgattaaaaaaccaacggtagttaactgctgtcagttttctagttataagtcagcggtagttaactac 25297318  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 38070105 - 38070043
Alignment:
Q  139 gttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgttttt 201  Q
    |||||||||||||| ||||||| ||||||| |  ||||| |||||||||||| | ||||||||    
T  38070105 gttaactaccgtcgattttctaattataagccaacagtaattaactacagctagggtgttttt 38070043  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 12232392 - 12232343
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    |||||||||||||||| |||| |||||||||||| ||  |||||||||||    
T  12232392 tagttaactaccgtcgattttttagttataagtcagcgatagttaactac 12232343  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 8842447 - 8842415
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagt 169  Q
    |||||||||||||||||||||||| ||||||||    
T  8842447 tagttaactaccgtcggttttctaattataagt 8842415  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 14251104 - 14251195
Alignment:
Q  97 gtttcctaaaaatatatgaaaatgatcaaaaacct--aacaatagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    ||||| ||||||||||||||||||||||||||  |  |||| ||||||| |||||||| ||||   ||||||| |  || ||||||||||||    
T  14251104 gtttcttaaaaatatatgaaaatgatcaaaaaaattaaacagtagttaattaccgtcgatttttctgttataaattagcggtagttaactac 14251195  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 41584197 - 41584151
Alignment:
Q  154 ttttctagttataagtcggcagtagttaactacagctggagtgtttt 200  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  41584197 ttttctagttataagtcagcagtagttaactacagcttgagtgtttt 41584151  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 28798970 - 28799018
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaacta 185  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||||    
T  28798970 tagttaactaccgccggttttctagttataagtcagcggtagttaacta 28799018  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 4252702 - 4252625
Alignment:
Q  91 tccattgtttcctaaaaatatatgaaaatgatcaaaaacctaacaatagttaactaccgtcggttttctagttataag 168  Q
    |||| ||||||||| ||| ||||| | ||||| ||||| | ||| | |||||||||||||| ||||||||||||||||    
T  4252702 tccaatgtttcctataaacatatggagatgattaaaaaaccaacgacagttaactaccgtcagttttctagttataag 4252625  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 25939397 - 25939313
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggtcattttcatatatttct 221  Q
    ||||||||||||  | ||||| |||||||||| | || |||||||||||| ||| | |||||||||||| ||| ||||| |||||    
T  25939397 tagttaactaccaccagttttatagttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttct 25939313  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 26423808 - 26423772
Alignment:
Q  150 tcggttttctagttataagtcggcagtagttaactac 186  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26423808 tcggttttctagttataagtcagcagtagttaactac 26423772  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 9040947 - 9040875
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactacagctggagtgtttttggtcattt 209  Q
    |||||||||| | || ||||||||||||||||   ||| || |||||||| |||| |||||||||||| ||||    
T  9040947 tagttaactatcatcagttttctagttataagcatgcaatatttaactaccgctgaagtgtttttggttattt 9040875  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 26452883 - 26452824
Alignment:
Q  154 ttttctagttataagtcggcagtagttaactacagctggagtgtttttggtcattttcat 213  Q
    ||||||||||||||| | || |||||||||||  ||||| ||||||||||||||||||||    
T  26452883 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcat 26452824  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 31070717 - 31070668
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    ||||||| |||||||  |||||||||||||||||||| ||||||||||||    
T  31070717 tagttaattaccgtcaattttctagttataagtcggcggtagttaactac 31070668  T

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Target: scaffold0197 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 26072 - 26023
Alignment:
Q  137 tagttaactaccgtcggttttctagttataagtcggcagtagttaactac 186  Q
    ||||||| |||||||  ||||||||||||||||| || ||||||||||||    
T  26072 tagttaattaccgtcaattttctagttataagtcagcggtagttaactac 26023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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