View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_high_44 (Length: 213)

Name: NF19485_high_44
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_high_44
NF19485_high_44
[»] chr4 (5 HSPs)
chr4 (1-204)||(46892078-46892281)
chr4 (117-200)||(46874372-46874455)
chr4 (1-68)||(46874277-46874344)
chr4 (1-83)||(46901273-46901355)
chr4 (108-204)||(46865558-46865654)
[»] chr3 (3 HSPs)
chr3 (92-204)||(27300899-27301011)
chr3 (146-204)||(27310808-27310866)
chr3 (5-58)||(27300743-27300796)
[»] chr8 (1 HSPs)
chr8 (1-40)||(22690218-22690257)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 46892078 - 46892281
Alignment:
Q  1 tggttgtcttgcaaatcagagttacaagttcctggtggagccattcaagctgaagctgcagttaccatagaatattcaacaaacgctgcctcctcccctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  46892078 tggttgtcttgcaaatcagagttacaagttcctggtggagccattcaagctgaagctgcagttaccatagaaaattcaacaaacgctgccacctcccctg 46892177  T
Q  101 caagtctacttgtggaaaaggaagaagagcatgttaggaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46892178 caagtctacttgtggaaaaggaagaagagcatgttaggaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattga 46892277  T
Q  201 tgat 204  Q
    ||||    
T  46892278 tgat 46892281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 46874372 - 46874455
Alignment:
Q  117 aaaggaagaagagcatgttaggaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattga 200  Q
    ||||||||| ||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46874372 aaaggaagaggagcaggcaaagaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattga 46874455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 46874277 - 46874344
Alignment:
Q  1 tggttgtcttgcaaatcagagttacaagttcctggtggagccattcaagctgaagctgcagttaccat 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  46874277 tggttgtcttgcaaatcagagttacaagttcctggcggagccattgaagctgaagctgcagttgccat 46874344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 46901273 - 46901355
Alignment:
Q  1 tggttgtcttgcaaatcagagttacaagttcctggtggagccattcaagctgaagctgcagttaccatagaatattcaacaaa 83  Q
    |||| ||||||||||||||||||||||| |||||||   | |||| ||||||||||||||||| |||||| | | ||||||||    
T  46901273 tggtggtcttgcaaatcagagttacaagctcctggtatgggcattgaagctgaagctgcagttgccatagtaaactcaacaaa 46901355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 46865558 - 46865654
Alignment:
Q  108 acttgtggaaaaggaagaagagcatgttaggaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattgatgat 204  Q
    |||||||| ||||||||| ||||| | || |||||  | | ||||| |||||||||| | | ||||||||||| |||| ||||||||||||||||||    
T  46865558 acttgtggcaaaggaagaggagcaggctaagaagatgcatttactttggttgaaattaaacaagatcaatcgtgtttatggtgattggattgatgat 46865654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 27300899 - 27301011
Alignment:
Q  92 cctcccctgcaagtctacttgtggaaaaggaagaagagcatgttaggaagaaacgtatacttgggttgaaattcagccagatcaatcgtatttacggtga 191  Q
    ||||||| |||||||||||||||||||||||||| || || |  | ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  27300899 cctccccggcaagtctacttgtggaaaaggaagatgaacaggcaaagaaaaaacgtatacttgggttgaaattcagcgagatcaatcgtatttatggtga 27300998  T
Q  192 ttggattgatgat 204  Q
    |||||||||||||    
T  27300999 ttggattgatgat 27301011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 27310808 - 27310866
Alignment:
Q  146 gtatacttgggttgaaattcagccagatcaatcgtatttacggtgattggattgatgat 204  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||    
T  27310808 gtatacttgggttaaaattcagcaagatcaatcgtatttatggtgattgaattgatgat 27310866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 27300743 - 27300796
Alignment:
Q  5 tgtcttgcaaatcagagttacaagttcctggtggagccattcaagctgaagctg 58  Q
    |||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||    
T  27300743 tgtcttgcaaattagagttacaagttcctgatggtggcattgaagctgaagctg 27300796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22690257 - 22690218
Alignment:
Q  1 tggttgtcttgcaaatcagagttacaagttcctggtggag 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  22690257 tggttgtcttgcaattcagagttactagttcctggtggag 22690218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University