View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_high_6 (Length: 536)
Name: NF19485_high_6
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 4709588 - 4709080
Alignment:
| Q |
19 |
gataccaaccgaatattgccacgttcggggctgatcagtttgacgaggagcactcaaaggagggtcacaataaagtggccttctttagctacttctacct |
118 |
Q |
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| T |
4709588 |
gataccaaccgaatattgccacgttcggggctgatcagtttgacgaggagcactcaaaggagggtcacaataaagtggccttctttagctacttctacct |
4709489 |
T |
|
| Q |
119 |
agctttgaactttgggcaactcttttcaaacaccattctcgtctatttcgaggatgaaggaatgtgggctcttggcttctggctgtctgcaggctgtgcc |
218 |
Q |
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| T |
4709488 |
agctttgaactttgggcaactcttttcaaacaccattctcgtctatttcgaggatgaaggaatgtgggctcttggcttctggctgtctgcaggctgtgcc |
4709389 |
T |
|
| Q |
219 |
tttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgccaagtccttgttgctg |
318 |
Q |
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| T |
4709388 |
tttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctcttgccaggttctgccaagtccttgttgctg |
4709289 |
T |
|
| Q |
319 |
catcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttctaccgatgtgaacagaaaaatcctcca |
418 |
Q |
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| T |
4709288 |
catcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtcttctaccgatgtgaacagaaaaatcctcca |
4709189 |
T |
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| Q |
419 |
cacacacgggttcaagtaagtgatagaagctaccttcagctgaaaccacaatactttcttatgtgcatatagccgaggctgcgagcatgaaacagttctc |
518 |
Q |
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| T |
4709188 |
cacacacgggttcaagtaagtgatagaagctaccttcagctgaaaccacaatactttcttatgtgcatatagccgaggctgcgagcatgaaacagttctc |
4709089 |
T |
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| Q |
519 |
cagtattat |
527 |
Q |
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| T |
4709088 |
caatattat |
4709080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 439
Target Start/End: Original strand, 40743007 - 40743356
Alignment:
| Q |
90 |
aaagtggccttctttagctacttctacctagctttgaactttgggcaactcttttcaaacaccattctcgtctatttcgaggatgaaggaatgtgggctc |
189 |
Q |
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|||||||| || ||||||||||| ||| | || |||||| |||| ||| || |||||||| ||| | | |||||| || ||||||||| | ||||||| |
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| T |
40743007 |
aaagtggcattttttagctacttttacttggcattgaaccttggttcacttttctcaaacactattttgggctattttgaagatgaaggattatgggctc |
40743106 |
T |
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| Q |
190 |
ttggcttctggctgtctgcaggctgtgcctttatcgcactgatactgtttcttgttggcactccaaagtaccgacatttcaagcccagtggcaaccctct |
289 |
Q |
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| T |
40743107 |
ttgggttttgggcttctgctgggtctgcctttttggctcttgtactttttcttgttggcaccccaaaatatagacactttaaaccttgtggcaatcctct |
40743206 |
T |
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| Q |
290 |
tgccaggttctgccaagtccttgttgctgcatcaaggaaagttaaagttgaaatgccatcaaatggagacgacttgtacaacatggatacaaaggagtct |
389 |
Q |
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| | || ||||||||||| || | ||||| ||||||||| | |||| ||||| | ||||||||||| |||||||| ||| ||| |||||||||| |
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| T |
40743207 |
ttctagattctgccaagtgtttttcgctgcttcaaggaaattgggagttcaaatgacttcaaatggagatgacttgtatgtcatagatgaaaaggagtct |
40743306 |
T |
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| Q |
390 |
tctaccgatgtgaacagaaaaatcctccacacacacgggttcaagtaagt |
439 |
Q |
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|||| | | |||||||| || ||||||||||| || ||||||||||| |
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| T |
40743307 |
tctaacaactccaacagaaagattctccacacacatggcttcaagtaagt |
40743356 |
T |
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