View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_10 (Length: 480)
Name: NF19485_low_10
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 39 - 473
Target Start/End: Complemental strand, 29319252 - 29318818
Alignment:
| Q |
39 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgctgtgcatcagctttgtctctttttggaatagga |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29319252 |
aatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgttgtgcatcagctttgtctctttttggaatagga |
29319153 |
T |
|
| Q |
139 |
tttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
238 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319152 |
tttgcacggcatctaagagaaacctctcaatttaatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaatcaaagcttaactctttat |
29319053 |
T |
|
| Q |
239 |
cactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319052 |
cactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagattggaatga |
29318953 |
T |
|
| Q |
339 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattagaggttaag |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
29318952 |
gaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgatgtgtgtgttgctgctggattagaggttaag |
29318853 |
T |
|
| Q |
439 |
cagaagcttgtttcagttagtggcaattcatctca |
473 |
Q |
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| T |
29318852 |
gataagcttgtttcaattagtggcaattcttctca |
29318818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 717214 - 717655
Alignment:
| Q |
20 |
accttaactatgtcctaagaatccaatggaactcttctgcttgtcaaaatttcaagtctttatcatcgaaagaaactagcacatgctgtgcatcagcttt |
119 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| | ||| |
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| T |
717214 |
accttaactatgtcctaagaattcattggaactcttcagcttgtcaaaatttcaattctttatcatccaaagaaactagcacatgttgtgcatctgtttt |
717313 |
T |
|
| Q |
120 |
gtctctttttggaataggatttgcacggcatctaagagaaacctctcagttttatcttcaagatcttcaaacttcaatttcatgcatgcaagattttcaa |
219 |
Q |
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|||||| ||||||||||||||||||| |||||| | |||||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
717314 |
gtctctctttggaataggatttgcacagcatcttaaagaaacttcacagttcaatcttcaagatcttcaaacttcaaattcatgcatgcaagattttcaa |
717413 |
T |
|
| Q |
220 |
tcaaagcttaactctttatcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
717414 |
tcaaagcttaactctttatcactttacaacaacttggtcaactcttgttttgaccctcttcaatttgttatctctcgtaacatatgtgcaggtattgaaa |
717513 |
T |
|
| Q |
320 |
ctgttcaagattggaatgagaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgt |
419 |
Q |
| |
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||||||| |||||||||||||| || |||||||||||| || | || |||||||||||||||||||||||| ||||||||||||| | | || |||| |
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| T |
717514 |
ctgttcatgattggaatgagaaagtgggtcagaattcatctttgaatactgcttgtaaaccagatctcactcatctttctcaatgtgatgcatgcgttgc |
717613 |
T |
|
| Q |
420 |
tgctggattagaggttaagcagaagcttgtttcagttagtgg |
461 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
717614 |
tgctggattacaggttaagcagaagcttgtttcagttagtgg |
717655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 26942185 - 26942214
Alignment:
| Q |
298 |
aacatatgtgcaggtattgaaactgttcaa |
327 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26942185 |
aacatatgtgcaggtattgaaactgttcaa |
26942214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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