View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_low_13 (Length: 459)

Name: NF19485_low_13
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_low_13
NF19485_low_13
[»] chr6 (3 HSPs)
chr6 (18-243)||(9619165-9619390)
chr6 (294-353)||(9619433-9619492)
chr6 (381-432)||(9619520-9619572)
[»] chr1 (3 HSPs)
chr1 (18-141)||(34130956-34131079)
chr1 (295-333)||(5993822-5993860)
chr1 (294-331)||(47930972-47931009)
[»] chr8 (1 HSPs)
chr8 (294-333)||(18605422-18605461)
[»] chr2 (2 HSPs)
chr2 (294-333)||(1483911-1483950)
chr2 (413-445)||(27081029-27081061)
[»] chr4 (1 HSPs)
chr4 (294-328)||(48141138-48141172)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 9619165 - 9619390
Alignment:
Q  18 gatccaaacacaatcaaagtcgacgccgtcaccgaaatagagctcaaagaaaatggtttctgaagcacaagaagaaccaaactggcctgcactattggtc 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||||||||||||| | ||||||||||||||    
T  9619165 gatccaaacacaatcaaagtcgacgccatcaccgaaatagagctcaaagaaaaccgtttccgaagcacaagaagaaccaaactcgtctgcactattggtc 9619264  T
Q  118 ccttcacatgcggcttcgaacaacggctccatattgatatttttacactgacaatgttgaacaattgttggttaggttttactgactttctggccaaacc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9619265 ccttcacatgcggcttcgaacaacggctccatattgatatttttacactgacaatgttgaacaattgttggttaggttttactgactttctggtcaaacc 9619364  T
Q  218 ctgtatcaccatagttaggggtggtc 243  Q
    ||||||||||||||||||||||||||    
T  9619365 ctgtatcaccatagttaggggtggtc 9619390  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 9619433 - 9619492
Alignment:
Q  294 ttactaacaattctgaaactgaaatgaaacaattcagttccgtaactaaaatttgatttc 353  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  9619433 ttactaacaattctgaaactgaaataaaacaattcagttcggtaactaaaatttgatttc 9619492  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 432
Target Start/End: Original strand, 9619520 - 9619572
Alignment:
Q  381 caacggtaccaatagtaacagttatgtt-ctgttcagtttgaaacagttcagt 432  Q
    ||||||||| ||||||||||||| |||| | ||||| ||||||||||||||||    
T  9619520 caacggtactaatagtaacagttctgttcccgttcaatttgaaacagttcagt 9619572  T

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Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 34131079 - 34130956
Alignment:
Q  18 gatccaaacacaatcaaagtcgacgccgtcaccgaaatagagctcaaagaaaatggtttctgaagcacaagaagaaccaaactggcctgcactattggtc 117  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||| | |||||||||||||||||||| | ||||||||||||||    
T  34131079 gatccaaacacaatcgaagtcgacgcagtcaccgaaacagagctcaaagaaaacggtttccgcagcacaagaagaaccaaactcgtctgcactattggtc 34130980  T
Q  118 ccttcacatgcggcttcgaacaac 141  Q
    ||  ||||||||||||||| ||||    
T  34130979 ccgccacatgcggcttcgaccaac 34130956  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 5993860 - 5993822
Alignment:
Q  295 tactaacaattctgaaactgaaatgaaacaattcagttc 333  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  5993860 tactaacaattctgaaactgaactgaaacagttcagttc 5993822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 47931009 - 47930972
Alignment:
Q  294 ttactaacaattctgaaactgaaatgaaacaattcagt 331  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  47931009 ttactaacaattctgaaactgaactgaaacagttcagt 47930972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 18605461 - 18605422
Alignment:
Q  294 ttactaacaattctgaaactgaaatgaaacaattcagttc 333  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  18605461 ttactgacaattctgaaactgaactgaaacaattcagttc 18605422  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 1483911 - 1483950
Alignment:
Q  294 ttactaacaattctgaaactgaaatgaaacaattcagttc 333  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  1483911 ttactaacaattctgaaactgaattgaaacaatttagttc 1483950  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 445
Target Start/End: Original strand, 27081029 - 27081061
Alignment:
Q  413 tcagtttgaaacagttcagtacagttcaaaatg 445  Q
    |||||||||||||||||||| ||||||||||||    
T  27081029 tcagtttgaaacagttcagttcagttcaaaatg 27081061  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 48141138 - 48141172
Alignment:
Q  294 ttactaacaattctgaaactgaaatgaaacaattc 328  Q
    ||||||||||||||||||||||| |||||||||||    
T  48141138 ttactaacaattctgaaactgaactgaaacaattc 48141172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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