View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_15 (Length: 426)
Name: NF19485_low_15
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 32 - 410
Target Start/End: Original strand, 6002343 - 6002731
Alignment:
| Q |
32 |
tcgtatacaagtttttacatgccattt----------ggtgtttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttctatt |
121 |
Q |
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| T |
6002343 |
tcgtatacaagtttttacatgccatttttcaccaaatggtctttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttcaatt |
6002442 |
T |
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| Q |
122 |
gtgcaaattttctggggacaaaaatagagttttgttttggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgca |
221 |
Q |
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| T |
6002443 |
gtgcaaattttctagggacaaaaatagagttttgttttggaaaaagctatttacagcgagaagttttctcgcgacaacaccacgaggcgtactgcatgca |
6002542 |
T |
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| Q |
222 |
agccaaattattattcacacacccatgtattttgcccacaacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgggttattcgt |
321 |
Q |
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| T |
6002543 |
agccaaattattattcacacacccatgtattttgcccacaacccatgaattgtgccaaaatgcagatatagcggtgctagtactttcgtgggttattcgt |
6002642 |
T |
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| Q |
322 |
gaacttggctccgctgtatatagcaaagctcttttgtttttcatattttctttcctcaatgtctttgtattctttcgtgcacaacaagt |
410 |
Q |
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| T |
6002643 |
gaacttggctccgctgtatatagcaaagctcttttgtttttcatattttctttcctcaatgtctttgtattctttcgtgcacaacaagt |
6002731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 160 - 312
Target Start/End: Original strand, 32188249 - 32188401
Alignment:
| Q |
160 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgccca |
259 |
Q |
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| T |
32188249 |
ggaaaaaactatttacagcgagaagttttctcgcgacaacaccacgacgcatactgcatgcaagccaaattattattcacacacccatgtattttgccta |
32188348 |
T |
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| Q |
260 |
caacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgg |
312 |
Q |
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| T |
32188349 |
ccacccatgaattgtgccaaaatgcagatctaacggtgctagtacttttgtgg |
32188401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 27645868 - 27645675
Alignment:
| Q |
160 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgccca |
259 |
Q |
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| T |
27645868 |
ggaaaaagctatgtatagcgaaaagttttctcgcgacaacaccatgacgtgtactgtattcaagcctagttattattcacacccccatgtatttagccaa |
27645769 |
T |
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| Q |
260 |
caacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgggttattcgtgaacttggctccgctgtatatagcaaagctct |
353 |
Q |
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| T |
27645768 |
ccactcatgcattgtgccaaaacgcagatcttacggttctagtgctttcgtgggttatttgtgaatttggcttcgctacatatagcaaagctct |
27645675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 323
Target Start/End: Original strand, 44833533 - 44833621
Alignment:
| Q |
234 |
attcacacacccatgtattttgcccacaacccatgaattgttccaaaatgcagatctagcggtgctggtactttcgtgggttattcgtga |
323 |
Q |
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| T |
44833533 |
attcacgcactcatgtattttgccaaccactcatgcattgtgccaaaacgcagatct-taggtgctagtgctttcgtgggttattcgtga |
44833621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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