View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_low_17 (Length: 403)

Name: NF19485_low_17
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_low_17
NF19485_low_17
[»] chr7 (19 HSPs)
chr7 (233-386)||(45637553-45637711)
chr7 (56-218)||(45638035-45638197)
chr7 (201-241)||(45637982-45638022)
chr7 (247-292)||(45602671-45602716)
chr7 (6-59)||(45639732-45639785)
chr7 (69-109)||(45602797-45602837)
chr7 (1-56)||(18655375-18655430)
chr7 (1-56)||(19336042-19336097)
chr7 (10-61)||(35097776-35097826)
chr7 (6-57)||(43596520-43596571)
chr7 (6-56)||(28000126-28000176)
chr7 (6-56)||(44412540-44412590)
chr7 (1-42)||(14554451-14554492)
chr7 (2-35)||(25622364-25622397)
chr7 (1-34)||(27880894-27880927)
chr7 (6-57)||(1263952-1264004)
chr7 (8-56)||(31417512-31417560)
chr7 (6-54)||(35097590-35097638)
chr7 (1-57)||(35158503-35158559)
[»] chr5 (16 HSPs)
chr5 (1-56)||(5661668-5661723)
chr5 (1-56)||(20992701-20992756)
chr5 (6-56)||(7899933-7899983)
chr5 (1-55)||(13012435-13012489)
chr5 (1-55)||(13083845-13083899)
chr5 (6-55)||(4221974-4222023)
chr5 (6-62)||(5661882-5661938)
chr5 (8-60)||(38861091-38861142)
chr5 (6-56)||(7899720-7899771)
chr5 (1-56)||(18254371-18254426)
chr5 (1-55)||(1497329-1497383)
chr5 (1-55)||(10598319-10598373)
chr5 (1-55)||(36518862-36518916)
chr5 (6-55)||(9672897-9672946)
chr5 (7-55)||(4633954-4634002)
chr5 (6-38)||(35936778-35936810)
[»] chr4 (36 HSPs)
chr4 (1-56)||(7086069-7086124)
chr4 (1-56)||(4431531-4431587)
chr4 (11-55)||(46523094-46523138)
chr4 (1-60)||(12878670-12878729)
chr4 (1-56)||(26144157-26144212)
chr4 (6-57)||(28292051-28292102)
chr4 (1-59)||(27450099-27450157)
chr4 (6-56)||(42861622-42861672)
chr4 (1-58)||(3475483-3475540)
chr4 (6-55)||(22451933-22451982)
chr4 (6-66)||(31110241-31110302)
chr4 (1-58)||(35904855-35904912)
chr4 (7-60)||(40450253-40450306)
chr4 (1-57)||(42802564-42802621)
chr4 (6-56)||(4928822-4928873)
chr4 (1-36)||(8974288-8974323)
chr4 (6-61)||(46360682-46360737)
chr4 (1-55)||(5326301-5326355)
chr4 (6-56)||(9884954-9885003)
chr4 (7-57)||(13032885-13032935)
chr4 (9-59)||(13033137-13033187)
chr4 (1-55)||(34318405-34318459)
chr4 (6-56)||(46360901-46360951)
chr4 (1-55)||(51902046-51902100)
chr4 (10-56)||(52439338-52439384)
chr4 (7-55)||(5419986-5420035)
chr4 (6-51)||(5420257-5420302)
chr4 (9-42)||(7085855-7085888)
chr4 (6-55)||(8590645-8590694)
chr4 (1-58)||(15782259-15782316)
chr4 (1-42)||(20514890-20514931)
chr4 (7-56)||(35904615-35904664)
chr4 (1-57)||(12144783-12144838)
chr4 (4-56)||(35370394-35370446)
chr4 (1-57)||(51902113-51902168)
chr4 (7-59)||(54097279-54097330)
[»] chr1 (12 HSPs)
chr1 (1-60)||(16555532-16555591)
chr1 (4-56)||(50880062-50880114)
chr1 (6-58)||(13296024-13296076)
chr1 (8-56)||(17724276-17724324)
chr1 (7-66)||(1632493-1632552)
chr1 (2-56)||(24004084-24004138)
chr1 (1-54)||(51809993-51810047)
chr1 (16-57)||(24004336-24004377)
chr1 (6-55)||(37847779-37847828)
chr1 (6-43)||(47839969-47840006)
chr1 (7-43)||(1363248-1363284)
chr1 (6-42)||(46136099-46136135)
[»] chr3 (26 HSPs)
chr3 (1-59)||(3820490-3820548)
chr3 (1-64)||(41747445-41747509)
chr3 (1-56)||(4548792-4548847)
chr3 (1-56)||(18946033-18946088)
chr3 (9-58)||(54087741-54087790)
chr3 (1-57)||(21549984-21550040)
chr3 (6-54)||(26480008-26480056)
chr3 (1-61)||(35434075-35434135)
chr3 (1-60)||(45333843-45333903)
chr3 (1-56)||(17261024-17261079)
chr3 (6-61)||(19301173-19301228)
chr3 (6-56)||(29853406-29853456)
chr3 (1-43)||(48044731-48044773)
chr3 (4-58)||(48418651-48418705)
chr3 (6-56)||(52491572-52491622)
chr3 (6-56)||(55090251-55090301)
chr3 (9-54)||(8487928-8487973)
chr3 (7-55)||(23390326-23390375)
chr3 (6-59)||(31341449-31341502)
chr3 (6-55)||(40066706-40066755)
chr3 (7-56)||(53667679-53667728)
chr3 (7-59)||(1421547-1421599)
chr3 (7-59)||(11761078-11761130)
chr3 (7-55)||(20123869-20123917)
chr3 (1-57)||(26480231-26480287)
chr3 (1-57)||(29853630-29853686)
[»] chr8 (10 HSPs)
chr8 (1-57)||(38687514-38687570)
chr8 (4-59)||(38132067-38132122)
chr8 (3-56)||(26538182-26538235)
chr8 (6-58)||(23564099-23564151)
chr8 (1-53)||(26711350-26711402)
chr8 (6-55)||(3785525-3785574)
chr8 (10-59)||(11961115-11961164)
chr8 (1-42)||(15152292-15152333)
chr8 (7-56)||(41709022-41709071)
chr8 (9-57)||(22686741-22686789)
[»] chr2 (26 HSPs)
chr2 (7-59)||(13691984-13692036)
chr2 (6-56)||(22552504-22552554)
chr2 (1-55)||(31108586-31108640)
chr2 (1-59)||(32845665-32845723)
chr2 (1-59)||(36944233-36944291)
chr2 (6-56)||(45632542-45632592)
chr2 (6-55)||(17688161-17688210)
chr2 (9-58)||(32650095-32650144)
chr2 (1-57)||(8214341-8214397)
chr2 (6-66)||(14793463-14793523)
chr2 (1-57)||(35916381-35916437)
chr2 (6-58)||(39341363-39341415)
chr2 (8-56)||(41611570-41611618)
chr2 (8-59)||(39341262-39341313)
chr2 (1-36)||(41089387-41089422)
chr2 (6-56)||(7327767-7327817)
chr2 (9-55)||(8467207-8467253)
chr2 (8-57)||(14793250-14793299)
chr2 (1-42)||(30371398-30371439)
chr2 (7-56)||(32845456-32845505)
chr2 (1-33)||(1243340-1243372)
chr2 (9-57)||(11115258-11115306)
chr2 (6-42)||(17688032-17688068)
chr2 (10-54)||(17920092-17920136)
chr2 (6-54)||(33441775-33441822)
chr2 (10-58)||(36944001-36944049)
[»] scaffold0318 (1 HSPs)
scaffold0318 (6-57)||(12396-12447)
[»] chr6 (12 HSPs)
chr6 (1-56)||(1309785-1309840)
chr6 (1-55)||(19412619-19412673)
chr6 (6-55)||(2181317-2181366)
chr6 (8-56)||(13420188-13420236)
chr6 (16-59)||(14985326-14985369)
chr6 (5-55)||(7313451-7313501)
chr6 (8-54)||(15959603-15959649)
chr6 (6-55)||(7017306-7017355)
chr6 (1-61)||(21604357-21604418)
chr6 (1-58)||(24602427-24602484)
chr6 (6-55)||(33352623-33352672)
chr6 (7-58)||(34348761-34348813)
[»] scaffold0111 (1 HSPs)
scaffold0111 (6-56)||(29691-29741)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-58)||(149482-149539)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 233 - 386
Target Start/End: Complemental strand, 45637711 - 45637553
Alignment:
Q  233 ttatttttatttacatgactttaagatcttttttatggtaacataaaacaaaaatataatgaaacaatttatatgcaagct-----acgactatataaat 327  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  45637711 ttatttttatttacatgacattaagatcttttttatggtaacataaaacaaaaatataatgaaacaatttatatgcaagctacgatacgactatataaat 45637612  T
Q  328 ccaattatgtaaataatcaagtattattgcttaactccatatgattcttagtcacaacc 386  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  45637611 ccaattatgtaaataatcaagtattattgtttaattccatatgattcttagtcacaacc 45637553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 45638197 - 45638035
Alignment:
Q  56 taaattctaatgatacttggataatcgaagaataactaatatattctatttctaattcttgtcnnnnnnncattctatttcaaatagtttcgggcaagtt 155  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  45638197 taaattctaatgatacttggataatcgaagaataattaatatattctatttctaattcttgtcaaaaaaacattctatttcaaatagtttcgggcaagtt 45638098  T
Q  156 tattcnnnnnnnnntaatagtttcagacaagttgctaatcatcttagaactaaagacatcttt 218  Q
    |||||          || ||||||||||||||||||||||||||||||| |||||||||||||    
T  45638097 tattcaaaaaaaaaaaaaagtttcagacaagttgctaatcatcttagaattaaagacatcttt 45638035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 45638022 - 45637982
Alignment:
Q  201 agaactaaagacatctttgaaacaaagattaattattttta 241  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  45638022 agaattaaagacatctttgaaacaaagattaattattttta 45637982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 45602716 - 45602671
Alignment:
Q  247 atgactttaagatcttttttatggtaacataaaacaaaaatataat 292  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||||    
T  45602716 atgacattaagatcctttttatggtaacataaaacagaaatataat 45602671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 45639732 - 45639785
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||||||    
T  45639732 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctaaa 45639785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 45602837 - 45602797
Alignment:
Q  69 tacttggataatcgaagaataactaatatattctatttcta 109  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  45602837 tacttggataatggaagaataattaatatattctatttcta 45602797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18655430 - 18655375
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||| ||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  18655430 caggaggaaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 18655375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19336097 - 19336042
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||| |||||||| ||||||||| |||||||||||| |||||| | ||||||||||    
T  19336097 caggggggaaaaccaaaaatgacctatattacagggggtaaaacaccattaaccct 19336042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 35097776 - 35097826
Alignment:
Q  10 aaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaatt 61  Q
    |||||||||||||| |||||||||||| |||||| | |||||||||||||||    
T  35097776 aaacaaaaaatgacctatattacaggg-gtaaaacaccattaaccctaaatt 35097826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 43596520 - 43596571
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||||    
T  43596520 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 43596571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 28000126 - 28000176
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  28000126 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 28000176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 44412540 - 44412590
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  44412540 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 44412590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14554451 - 14554492
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaa 42  Q
    |||| |||||||||||||||||| |||||||||||| |||||    
T  14554451 caggggggaaaacaaaaaatgacctatattacagggggtaaa 14554492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 25622364 - 25622397
Alignment:
Q  2 aggagggaaaacaaaaaatgacttatattacagg 35  Q
    |||||||||||||||||||||| |||||||||||    
T  25622364 aggagggaaaacaaaaaatgacctatattacagg 25622397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27880927 - 27880894
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacag 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  27880927 caggagggaaaacaaaaaatgacctatattacag 27880894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 1263952 - 1264004
Alignment:
Q  6 gggaaaacaaaaaatgacttatattac-agggagtaaaatatcattaacccta 57  Q
    |||||||||||||||||| |||||||| |||| |||||| | |||||||||||    
T  1263952 gggaaaacaaaaaatgacctatattacaagggggtaaaacaccattaacccta 1264004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 31417512 - 31417560
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  31417512 gaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 31417560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 35097638 - 35097590
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacc 54  Q
    |||||||| ||||||||| |||||||||||| ||||| || ||||||||    
T  35097638 gggaaaaccaaaaatgacctatattacagggggtaaagtaccattaacc 35097590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35158503 - 35158559
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    |||| ||||||||  ||||||||||||||||||||| |||||| |  ||||||||||    
T  35158503 caggggggaaaaccgaaaatgacttatattacagggggtaaaagactattaacccta 35158559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5661723 - 5661668
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||| |||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  5661723 caggggggaaaacaaaaaatgacctatattacagagggtaaaatatcattaaccct 5661668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20992756 - 20992701
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||    
T  20992756 caggagggaaaacaaaaaatgacctatattacagggggtaaattaccattaaccct 20992701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 7899933 - 7899983
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  7899933 gggaaaacaaaaaatgacctatattacagggggtaaaacatcattaaccct 7899983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13012489 - 13012435
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  13012489 caggagggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 13012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13083899 - 13083845
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  13083899 caggagggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 13083845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 4221974 - 4222023
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||| ||||||||| |||||||||||| |||||||| |||||||||    
T  4221974 gggaaaaccaaaaatgacctatattacagggggtaaaataccattaaccc 4222023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 5661882 - 5661938
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaattc 62  Q
    |||||||||||||||||  |||||||||||| |||||  | ||||||||||||||||    
T  5661882 gggaaaacaaaaaatgatctatattacagggggtaaagcaccattaaccctaaattc 5661938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 38861142 - 38861091
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaat 60  Q
    ||||||||||||| ||||||||||||||| |||||| | ||||||||||||||    
T  38861142 gaaaacaaaaaataacttatattacaggg-gtaaaacaccattaaccctaaat 38861091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 7899771 - 7899720
Alignment:
Q  6 gggaaaacaaaaaatgacttatattaca-gggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  7899771 gggaaaacaaaaaatgacctatattacaggggggtaaaacatcattaaccct 7899720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18254371 - 18254426
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||| |||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  18254371 caggggggaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 18254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1497383 - 1497329
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||| |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  1497383 caggggggaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccc 1497329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10598373 - 10598319
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||| |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  10598373 caggggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 10598319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36518862 - 36518916
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||| ||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  36518862 caggaaggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 36518916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 9672946 - 9672897
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  9672946 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 9672897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 4634002 - 4633954
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  4634002 ggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 4633954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 35936778 - 35936810
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggag 38  Q
    |||||||||||||||||| ||||||||||||||    
T  35936778 gggaaaacaaaaaatgacctatattacagggag 35936810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7086069 - 7086124
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||||||||||||| |||||||||||| |||||| | ||||||||||    
T  7086069 caggagggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 7086124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4431531 - 4431587
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagg-gagtaaaatatcattaaccct 56  Q
    ||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  4431531 caggagggaaaacaaaaaatgacctatattacaggagggtaaaacatcattaaccct 4431587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 46523138 - 46523094
Alignment:
Q  11 aacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  46523138 aacaaaaaatgacttatattacagggggtaaaacatcattaaccc 46523094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12878729 - 12878670
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaat 60  Q
    |||| |||||||||||||||||| |||||||||||| |||||  | ||||||||||||||    
T  12878729 caggggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctaaat 12878670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26144212 - 26144157
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  26144212 caggagggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 26144157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 28292102 - 28292051
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    |||||||||||||||||| |||||||||||| |||||| | |||||||||||    
T  28292102 gggaaaacaaaaaatgacctatattacagggggtaaaacaccattaacccta 28292051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27450099 - 27450157
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||| |||||||| ||||||||| |||||||||||| |||||| | |||||||||||||    
T  27450099 caggggggaaaaccaaaaatgacatatattacagggggtaaaacaccattaaccctaaa 27450157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 42861622 - 42861672
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||  ||||||||||||    
T  42861622 gggaaaacaaaaaatgacctatattacagggggtaaatcatcattaaccct 42861672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3475540 - 3475483
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||| |||||||||||||||||| |||||||||||| |||||  | ||||||||||||    
T  3475540 caggggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctaa 3475483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 22451982 - 22451933
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||| | |||||||||    
T  22451982 gggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 22451933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 31110302 - 31110241
Alignment:
Q  6 gggaaaacaaaaaatgacttatattaca-gggagtaaaatatcattaaccctaaattctaat 66  Q
    |||||||||||||||||| ||||||||| ||| |||||| | ||||||||||||||| ||||    
T  31110302 gggaaaacaaaaaatgacctatattacaggggggtaaaacaccattaaccctaaattttaat 31110241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35904855 - 35904912
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||| ||||||| |||||||||| ||||||||||||||||||  | ||||||||||||    
T  35904855 caggggggaaaataaaaaatgacctatattacagggagtaaagcaccattaaccctaa 35904912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 40450306 - 40450253
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaat 60  Q
    |||||||||||||| || |||||||||||| |||||| | ||||||||||||||    
T  40450306 ggaaaacaaaaaataacctatattacagggggtaaaacaccattaaccctaaat 40450253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42802564 - 42802621
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattaca-gggagtaaaatatcattaacccta 57  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||| | |||||||||||    
T  42802564 caggagggaaaaccaaaaatgacttatattacaggggggtaaaacaccattaacccta 42802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 4928873 - 4928822
Alignment:
Q  6 gggaaaacaaaaaatgacttatattaca-gggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  4928873 gggaaaacaaaaaatgacctatattacaggggggtaaaacatcattaaccct 4928822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8974323 - 8974288
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacaggg 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8974323 caggagggaaaacaaaaaatgacctatattacaggg 8974288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 46360737 - 46360682
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaatt 61  Q
    |||||||||||||||||| ||||||||||||  ||||| | ||||||||| |||||    
T  46360737 gggaaaacaaaaaatgacctatattacaggggctaaaacaccattaacccgaaatt 46360682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5326301 - 5326355
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||| ||||||||||||||| ||||||||||||  |||| || |||||||||    
T  5326301 caggaggaaaaacaaaaaatgacctatattacaggggttaaagtaccattaaccc 5326355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 9885003 - 9884954
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||| | ||||||||||    
T  9885003 gggaaaacaaaaaatgacctatattacaggg-gtaaaacaccattaaccct 9884954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 13032935 - 13032885
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||||| ||||||||| |||||||||||| |||||| | |||||||||||    
T  13032935 ggaaaaccaaaaatgacctatattacagggggtaaaacaccattaacccta 13032885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 13033137 - 13033187
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    ||||||||||||||| |||||||||||| |||||  | |||||||||||||    
T  13033137 aaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctaaa 13033187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34318459 - 34318405
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||| ||| |||||||||||||| |||||||||||| |||||| | |||||||||    
T  34318459 cagggggggaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 34318405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 46360901 - 46360951
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  46360901 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 46360951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 51902100 - 51902046
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||||||||| |||||| || |||||||||||| |||||| | |||||||||    
T  51902100 caggagggaaaaccaaaaataacctatattacagggggtaaaacaccattaaccc 51902046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 52439384 - 52439338
Alignment:
Q  10 aaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||| |||||||||||| |||||| | ||||||||||    
T  52439384 aaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 52439338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 5420035 - 5419986
Alignment:
Q  7 ggaaaacaaaaaatgacttatattaca-gggagtaaaatatcattaaccc 55  Q
    ||||||||||||||||| ||||||||| |||||||||| | |||||||||    
T  5420035 ggaaaacaaaaaatgacctatattacaggggagtaaaacaccattaaccc 5419986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 5420257 - 5420302
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcatta 51  Q
    |||||||||||||||||| |||||||||||| |||||  |||||||    
T  5420257 gggaaaacaaaaaatgacctatattacagggggtaaagcatcatta 5420302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 7085888 - 7085855
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaa 42  Q
    ||||||||||||||| ||||||||||||||||||    
T  7085888 aaaacaaaaaatgacatatattacagggagtaaa 7085855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 8590694 - 8590645
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  8590694 gggaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccc 8590645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15782316 - 15782259
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||| |||||||||||||||||| ||||||||| || |||||  | ||||||||||||    
T  15782316 caggggggaaaacaaaaaatgacctatattacaaggggtaaagcaccattaaccctaa 15782259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20514890 - 20514931
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaa 42  Q
    |||| |||||||||||||||||| |||||||||||| |||||    
T  20514890 caggggggaaaacaaaaaatgacctatattacagggggtaaa 20514931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 35904664 - 35904615
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||| ||||||||||||||| |||||  | ||||||||||    
T  35904664 ggaaaacaaaaaataacttatattacagggggtaaagcaccattaaccct 35904615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12144783 - 12144838
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||||| ||||||||||||||| |||||||||||| |||||  | |||||||||||    
T  12144783 caggaggaaaaacaaaaaatgacctatattacaggg-gtaaagcaccattaacccta 12144838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 35370394 - 35370446
Alignment:
Q  4 gagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||| ||||||||| |||||||||||| |||||  | ||||||||||    
T  35370394 gagggaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccct 35370446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 51902113 - 51902168
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||| |||||||||||||| || |||||||||||| |||||| | |||||||||||    
T  51902113 caggaaggaaaacaaaaaataacatatattacaggg-gtaaaacaccattaacccta 51902168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 54097279 - 54097330
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    ||||||||||||||||| |||||||||||| |||||| | |||||||| ||||    
T  54097279 ggaaaacaaaaaatgacctatattacaggg-gtaaaacaccattaaccttaaa 54097330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16555532 - 16555591
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaat 60  Q
    |||| |||||||||||||||||| ||||||||||||||||||  | ||||||||||||||    
T  16555532 caggggggaaaacaaaaaatgacctatattacagggagtaaagcaccattaaccctaaat 16555591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 50880062 - 50880114
Alignment:
Q  4 gagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||    
T  50880062 gagggtaaacaaaaaatgacttatattacagggggtaaaacaccattaaccct 50880114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 13296024 - 13296076
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||||||| |||||||||||||||||||||| |||||  | ||||||||||||    
T  13296024 gggaaaaccaaaaatgacttatattacagggggtaaagcaccattaaccctaa 13296076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 17724276 - 17724324
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||| |||||||||||| |||||| | ||||||||||    
T  17724276 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 17724324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 1632493 - 1632552
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaattctaat 66  Q
    ||||||||||||||||| |||||||||||| || ||| | |||||||||| || ||||||    
T  1632493 ggaaaacaaaaaatgacctatattacagggggttaaacaccattaacccttaaatctaat 1632552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 24004138 - 24004084
Alignment:
Q  2 aggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||    
T  24004138 aggagggaaaataaaaaatgacatatattacagggggtaaagcaccattaaccct 24004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51809993 - 51810047
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacaggga-gtaaaatatcattaacc 54  Q
    |||| |||||||||||||||||| ||||||||||||| |||||| | ||||||||    
T  51809993 caggggggaaaacaaaaaatgacctatattacagggaggtaaaacaccattaacc 51810047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 24004336 - 24004377
Alignment:
Q  16 aaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||| || ||||||||||||||||||| |||||||||||||    
T  24004336 aaaataacctatattacagggagtaaaacatcattaacccta 24004377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 37847779 - 37847828
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  37847779 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 37847828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 47839969 - 47840006
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaa 43  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  47839969 gggaaaacaaaaaatgacctatattacagggggtaaaa 47840006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 1363248 - 1363284
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaa 43  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  1363248 ggaaaacaaaaaatgacctatattacagggggtaaaa 1363284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 46136135 - 46136099
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaa 42  Q
    |||||||||||||||||| |||||||||||| |||||    
T  46136135 gggaaaacaaaaaatgacctatattacagggggtaaa 46136099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3820548 - 3820490
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    ||||| ||||||||||||||||| |||||||||||| |||||| | |||||||||||||    
T  3820548 caggaaggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccctaaa 3820490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41747445 - 41747509
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattaca-gggagtaaaatatcattaaccctaaattcta 64  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||  |||||||||||| |||||||    
T  41747445 caggagggaaaacaaaaaatgacctatattacaggggggtaaagcatcattaacccttaattcta 41747509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4548792 - 4548847
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||| ||||||| |||||||||| |||||||||||| |||||| ||||||||||||    
T  4548792 caggggggaaaataaaaaatgacctatattacagggggtaaaacatcattaaccct 4548847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18946033 - 18946088
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||| |||| |||||||||| |||||||||||| |||||| ||||||||||||    
T  18946033 caggaggaaaaataaaaaatgacctatattacagggggtaaaacatcattaaccct 18946088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 54087741 - 54087790
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    ||||||||||||||| |||||||||||| |||||| | ||||||||||||    
T  54087741 aaaacaaaaaatgacctatattacagggggtaaaacaccattaaccctaa 54087790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21549984 - 21550040
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||||||||||||||||||||| |||||||||||  |||||  | |||||||||||    
T  21549984 caggagggaaaacaaaaaatgacctatattacaggcggtaaagcaccattaacccta 21550040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 26480056 - 26480008
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacc 54  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||||||    
T  26480056 gggaaaacaaaaaatgacctatattacggggggtaaaacatcattaacc 26480008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35434075 - 35434135
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaatt 61  Q
    ||||||||||||| ||||||||| |||||||||||| |||||  | |||||||||| ||||    
T  35434075 caggagggaaaaccaaaaatgacctatattacagggggtaaagcaccattaacccttaatt 35434135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45333903 - 45333843
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagg-gagtaaaatatcattaaccctaaat 60  Q
    |||| |||||||||||||||||| ||||||||||| | |||||| | ||||||||||||||    
T  45333903 caggggggaaaacaaaaaatgacctatattacaggagggtaaaacaccattaaccctaaat 45333843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17261079 - 17261024
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||| ||||||||| |||||||||||| |||||  | ||||||||||    
T  17261079 caggagggaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccct 17261024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 19301228 - 19301173
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaatt 61  Q
    ||||||| |||||||||| |||||||||||| |||||| | |||||||||| ||||    
T  19301228 gggaaaataaaaaatgacctatattacagggggtaaaacaccattaacccttaatt 19301173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 29853456 - 29853406
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||| ||||||||||||||||||||||| |||||  | ||||||||||    
T  29853456 gggaaaataaaaaatgacttatattacagggggtaaagcaccattaaccct 29853406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 48044731 - 48044773
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaa 43  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||    
T  48044731 caggagggaaaaccaaaaatgacttatattgcagggggtaaaa 48044773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 48418705 - 48418651
Alignment:
Q  4 gagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    ||||||||| |||||||||| |||||||||||| |||||  | ||||||||||||    
T  48418705 gagggaaaataaaaaatgacctatattacagggggtaaagcaccattaaccctaa 48418651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 52491622 - 52491572
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| ||||||||| || |||||| | ||||||||||    
T  52491622 gggaaaacaaaaaatgacctatattacatggggtaaaacaccattaaccct 52491572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 55090251 - 55090301
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  55090251 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 55090301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 8487928 - 8487973
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaaatatcattaacc 54  Q
    ||||||||||||||| |||||||||||| |||||| | ||||||||    
T  8487928 aaaacaaaaaatgacctatattacagggggtaaaacaccattaacc 8487973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 23390326 - 23390375
Alignment:
Q  7 ggaaaacaaaaaatgacttatattac-agggagtaaaatatcattaaccc 55  Q
    ||||||||||||||||| |||||||| |||| |||||| |||||||||||    
T  23390326 ggaaaacaaaaaatgacctatattacaagggggtaaaacatcattaaccc 23390375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 31341449 - 31341502
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||||||||||||||||| |||||||||||  |||||  | |||||||||||||    
T  31341449 gggaaaacaaaaaatgacctatattacaggaggtaaagcaccattaaccctaaa 31341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 40066755 - 40066706
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  40066755 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 40066706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 53667728 - 53667679
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  53667728 ggaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 53667679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 1421547 - 1421599
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    ||||||||||||||||| |||||||||||| ||| |  | |||||||||||||    
T  1421547 ggaaaacaaaaaatgacctatattacagggggtacatcaccattaaccctaaa 1421599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 11761130 - 11761078
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    ||||||| ||||||||| |||||||||||| |||||  | |||||||||||||    
T  11761130 ggaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccctaaa 11761078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 20123869 - 20123917
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||| |||||||||| |||||||||||| |||||| | |||||||||    
T  20123869 ggaaaataaaaaatgacctatattacagggggtaaaacaccattaaccc 20123917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26480231 - 26480287
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||||||||||| ||| ||||| ||||||| |||| |||||| | |||||||||||    
T  26480231 caggagggaaaaccaaacatgacctatattagagggggtaaaacaccattaacccta 26480287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29853630 - 29853686
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||||||||||| ||||| ||| |||||||||||| |||||  | |||||||||||    
T  29853630 caggagggaaaaccaaaaacgacctatattacagggggtaaagcaccattaacccta 29853686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38687514 - 38687570
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| | |||||||||||    
T  38687514 caggagggaaaacaaaaaatgacctatattacaggggataaaacaccattaacccta 38687570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 38132067 - 38132122
Alignment:
Q  4 gagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||| ||||||||||||||| |||||||||||| |||||| | |||||||||||||    
T  38132067 gaggaaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccctaaa 38132122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 26538182 - 26538235
Alignment:
Q  3 ggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||  |||||||||||| |||||||||||| |||||| ||||||||||||    
T  26538182 ggagggattacaaaaaatgacctatattacagggggtaaaacatcattaaccct 26538235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 23564151 - 23564099
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||||||||||||||||| |||||||||||| |||||  | ||||||||||||    
T  23564151 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctaa 23564099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26711402 - 26711350
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaac 53  Q
    ||||||||||||| ||||||||| |||||||||||| |||||| | |||||||    
T  26711402 caggagggaaaaccaaaaatgacatatattacagggggtaaaacaccattaac 26711350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 3785574 - 3785525
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  3785574 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 3785525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 11961115 - 11961164
Alignment:
Q  10 aaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||||||||||||| |||||||||||| |||||  | |||||||||||||    
T  11961115 aaacaaaaaatgacctatattacagggggtaaaccaccattaaccctaaa 11961164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15152292 - 15152333
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaa 42  Q
    |||| |||||||||||||||||| |||||||||||| |||||    
T  15152292 caggggggaaaacaaaaaatgacctatattacagggggtaaa 15152333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 41709022 - 41709071
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||||||| |||| ||||||| |||||  ||||||||||||    
T  41709022 ggaaaacaaaaaatgacctataatacagggggtaaagcatcattaaccct 41709071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 22686789 - 22686741
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||||||||||||| |||||||||||| |||||  | |||||||||||    
T  22686789 aaaacaaaaaatgacctatattacagggggtaaagcaccattaacccta 22686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 13691984 - 13692036
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||||||||||||||||||||||||||||| |||||  | |||||||||||||    
T  13691984 ggaaaacaaaaaatgacttatattacagggggtaaagcaccattaaccctaaa 13692036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 22552554 - 22552504
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||| | ||||||||||    
T  22552554 gggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 22552504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31108586 - 31108640
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||| |||||||||||||||||| |||||||||||| |||||| | |||||||||    
T  31108586 caggggggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 31108640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32845665 - 32845723
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||| |||||||||||||||||| |||||||||||| |||||  | |||||||||||||    
T  32845665 caggggggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctaaa 32845723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36944233 - 36944291
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||| |||||||||||||||||| |||||||||||| |||||  | |||||||||||||    
T  36944233 caggtgggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccctaaa 36944291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 45632592 - 45632542
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||| | ||||||||||    
T  45632592 gggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 45632542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 17688161 - 17688210
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||| | |||||||||    
T  17688161 gggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 17688210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 32650095 - 32650144
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||| ||||    
T  32650095 aaaacaaaaaatgacctatattacagggggtaaaacatcattaactctaa 32650144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8214397 - 8214341
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    |||| ||||||| |||||||||| |||||||||||| |||||| | |||||||||||    
T  8214397 caggggggaaaataaaaaatgacctatattacagggggtaaaacaccattaacccta 8214341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 14793463 - 14793523
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaattctaat 66  Q
    |||||||| ||||||||| |||||||||||| |||||  | ||||||||||||||| ||||    
T  14793463 gggaaaaccaaaaatgacctatattacagggggtaaagcaccattaaccctaaattataat 14793523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35916437 - 35916381
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    |||| ||||||| |||||||||| ||||||||||||||||||  | |||||||||||    
T  35916437 caggtgggaaaataaaaaatgacatatattacagggagtaaagcaccattaacccta 35916381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 39341363 - 39341415
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||||||| ||||||||| |||||||||||| |||||| | ||||||||||||    
T  39341363 gggaaaaccaaaaatgacctatattacagggggtaaaacaccattaaccctaa 39341415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 41611570 - 41611618
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||| |||||||||||| |||||| | ||||||||||    
T  41611570 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 41611618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 39341313 - 39341262
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    |||||| ||||||||| |||||||||||| |||||| | |||||||||||||    
T  39341313 gaaaaccaaaaatgacctatattacagggggtaaaacaccattaaccctaaa 39341262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41089387 - 41089422
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacaggg 36  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41089387 caggaaggaaaacaaaaaatgacttatattacaggg 41089422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 7327817 - 7327767
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  7327817 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 7327767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 8467253 - 8467207
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||||||||||| ||||||||||||||||||  | |||||||||    
T  8467253 aaaacaaaaaatgacctatattacagggagtaaagcaccattaaccc 8467207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 14793299 - 14793250
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    ||||| |||||||||| |||||||||||| |||||| | |||||||||||    
T  14793299 gaaaataaaaaatgacctatattacagggggtaaaacaccattaacccta 14793250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30371439 - 30371398
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaa 42  Q
    |||| |||||||| ||||||||| ||||||||||||||||||    
T  30371439 caggggggaaaaccaaaaatgacctatattacagggagtaaa 30371398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 32845505 - 32845456
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  32845505 ggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccct 32845456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1243372 - 1243340
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattaca 33  Q
    ||||||||||||||||||||||| |||||||||    
T  1243372 caggagggaaaacaaaaaatgacctatattaca 1243340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 11115306 - 11115258
Alignment:
Q  9 aaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    |||||||||||| || |||||||||||| |||||| | |||||||||||    
T  11115306 aaaacaaaaaataacctatattacagggggtaaaacaccattaacccta 11115258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 17688068 - 17688032
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaa 42  Q
    |||||||||||||||||| |||||||||||| |||||    
T  17688068 gggaaaacaaaaaatgacctatattacagggggtaaa 17688032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 17920136 - 17920092
Alignment:
Q  10 aaacaaaaaatgacttatattacagggagtaaaatatcattaacc 54  Q
    |||||||||||||| |||||||||||| |||||| | ||||||||    
T  17920136 aaacaaaaaatgacctatattacagggggtaaaacaccattaacc 17920092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 33441775 - 33441822
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacc 54  Q
    |||||||||||||||||| ||||||||||||| ||||| | ||||||||    
T  33441775 gggaaaacaaaaaatgacctatattacaggga-taaaacaccattaacc 33441822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 36944049 - 36944001
Alignment:
Q  10 aaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||||||||||||| |||||||||||| |||||| | |||||| |||||    
T  36944049 aaacaaaaaatgacctatattacagggggtaaaacaccattaatcctaa 36944001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 12447 - 12396
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaacccta 57  Q
    |||||||||||||||||| |||||||||||| |||||  |||||||||||||    
T  12447 gggaaaacaaaaaatgacctatattacagggggtaaagcatcattaacccta 12396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1309840 - 1309785
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    ||||||||||||||||||||||| |||||||||||| |||||  | ||||||||||    
T  1309840 caggagggaaaacaaaaaatgacctatattacagggggtaaatcaccattaaccct 1309785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19412619 - 19412673
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||||||||| ||||||||| |||||||||||| | |||| |||||||||||    
T  19412619 caggagggaaaactaaaaatgacctatattacagggggcaaaacatcattaaccc 19412673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 2181366 - 2181317
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||| | |||||||||    
T  2181366 gggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccc 2181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 13420236 - 13420188
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||| |||||||||||||||||||||| |||||| | ||||||||||    
T  13420236 gaaaaccaaaaatgacttatattacagggggtaaaacaccattaaccct 13420188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 14985326 - 14985369
Alignment:
Q  16 aaaatgacttatattacagggagtaaaatatcattaaccctaaa 59  Q
    ||||||||||||||||||||| |||||| | |||||||||||||    
T  14985326 aaaatgacttatattacagggggtaaaacaccattaaccctaaa 14985369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 7313501 - 7313451
Alignment:
Q  5 agggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    ||||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  7313501 agggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 7313451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 15959603 - 15959649
Alignment:
Q  8 gaaaacaaaaaatgacttatattacagggagtaaaatatcattaacc 54  Q
    |||||||||||||||| |||||||||||| |||||| | ||||||||    
T  15959603 gaaaacaaaaaatgacctatattacagggggtaaaacaccattaacc 15959649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 7017306 - 7017355
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  7017306 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 7017355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21604357 - 21604418
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattaca-gggagtaaaatatcattaaccctaaatt 61  Q
    |||| |||||||||||||||||| ||||||||| ||| |||||  | |||||||||||||||    
T  21604357 caggggggaaaacaaaaaatgacctatattacaggggggtaaagcaccattaaccctaaatt 21604418  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24602484 - 24602427
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||| |||||||||||||||||| ||||||||| || |||||  | ||||||||||||    
T  24602484 caggggggaaaacaaaaaatgacctatattacaaggggtaaagcaccattaaccctaa 24602427  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 33352623 - 33352672
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccc 55  Q
    |||||||||||||||||| |||||||||||| |||||  | |||||||||    
T  33352623 gggaaaacaaaaaatgacctatattacagggggtaaagcaccattaaccc 33352672  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 34348813 - 34348761
Alignment:
Q  7 ggaaaacaaaaaatgacttatattacaggga-gtaaaatatcattaaccctaa 58  Q
    |||||| |||||||||| ||||||||||||| |||||  ||||||||||||||    
T  34348813 ggaaaataaaaaatgacctatattacagggaggtaaagcatcattaaccctaa 34348761  T

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Target: scaffold0111 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 29691 - 29741
Alignment:
Q  6 gggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccct 56  Q
    |||||||||||||||||| |||||||||||| |||||| | ||||||||||    
T  29691 gggaaaacaaaaaatgacctatattacagggggtaaaacaccattaaccct 29741  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 149539 - 149482
Alignment:
Q  1 caggagggaaaacaaaaaatgacttatattacagggagtaaaatatcattaaccctaa 58  Q
    |||| |||||||||||||||||| |||||| ||||| |||||  | ||||||||||||    
T  149539 caggggggaaaacaaaaaatgacctatatttcagggggtaaagcaccattaaccctaa 149482  T

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