View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_low_18 (Length: 375)

Name: NF19485_low_18
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_low_18
NF19485_low_18
[»] chr4 (7 HSPs)
chr4 (184-365)||(42430542-42430726)
chr4 (26-118)||(42431912-42432004)
chr4 (184-229)||(49058149-49058194)
chr4 (140-184)||(42431272-42431316)
chr4 (259-320)||(21404819-21404880)
chr4 (191-223)||(3071786-3071818)
chr4 (238-298)||(5795386-5795446)
[»] chr2 (2 HSPs)
chr2 (184-228)||(5816255-5816299)
chr2 (238-298)||(12517731-12517790)
[»] chr1 (2 HSPs)
chr1 (191-223)||(4033307-4033339)
chr1 (238-298)||(36428751-36428811)
[»] chr3 (1 HSPs)
chr3 (192-229)||(49089436-49089473)
[»] chr5 (1 HSPs)
chr5 (179-223)||(11664864-11664908)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 184 - 365
Target Start/End: Complemental strand, 42430726 - 42430542
Alignment:
Q  184 aaacttgggggcctaaaacctttgctttagtggcagcccccttga---ggccctgaacccacccaacttagcacgagggagaatcaaatatgagaccttg 280  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  42430726 aaactcgggggcctaaagcctttgctttagtggcagcccccttggactggccctgaacccacccaacttagcatcagggagaatcaaatatgagaccttg 42430627  T
Q  281 aggatgatcatactccaaagactcaagtcaatgccactaagctaatccaactgagttttgtattgaagttgcctactctcctatg 365  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  42430626 aggatgatcatactcccaggactcaagtcaataccactaagctaatccaactaggttttgtattgaagttgcctactctcctatg 42430542  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 42432004 - 42431912
Alignment:
Q  26 ggctcgttcattgagttctattctaacatatgatttaactttgaaaatgaaaaatgattttaatgaaatggtgctcgttaagtatttgttgta 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42432004 ggctcgttcattgagttctattctaacttatgatttaactttgaaaatgaaaaattattttaatgaaatggtgctcgttaagtatttgttgta 42431912  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 49058194 - 49058149
Alignment:
Q  184 aaacttgggggcctaaaacctttgctttagtggcagcccccttgag 229  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  49058194 aaacttgggggcctaaaacctttgctttagtggcaacccccttgag 49058149  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 42431316 - 42431272
Alignment:
Q  140 cgggaccggcccaatatatttttaagcctaaagtcgatttaaaga 184  Q
    |||||||||||||||||||||||| |||||||||| |||||||||    
T  42431316 cgggaccggcccaatatatttttaggcctaaagtccatttaaaga 42431272  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 21404819 - 21404880
Alignment:
Q  259 gagaatcaaatatgagaccttgaggatgatcatactccaaagactcaagtcaatgccactaa 320  Q
    |||||||||| ||||||||||||||| || |||||||  | | |||||||||||||||||||    
T  21404819 gagaatcaaacatgagaccttgaggaggagcatactctcaggtctcaagtcaatgccactaa 21404880  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 3071786 - 3071818
Alignment:
Q  191 ggggcctaaaacctttgctttagtggcagcccc 223  Q
    ||||||||||||| |||||||||||||||||||    
T  3071786 ggggcctaaaacccttgctttagtggcagcccc 3071818  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 5795386 - 5795446
Alignment:
Q  238 cccacccaacttagcacgagggagaatcaaatatgagaccttgaggatgatcatactccaa 298  Q
    ||||||||| || ||||  ||||||||||||  |||||||||||||| || ||||||||||    
T  5795386 cccacccaaattggcactggggagaatcaaacctgagaccttgaggaggagcatactccaa 5795446  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 5816299 - 5816255
Alignment:
Q  184 aaacttgggggcctaaaacctttgctttagtggcagcccccttga 228  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  5816299 aaacttggggacctaaaacctttgctttagtggcagcccccttga 5816255  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 12517731 - 12517790
Alignment:
Q  238 cccacccaacttagcacgagggagaatcaaatatgagaccttgaggatgatcatactccaa 298  Q
    ||||||||| || |||| ||||||||||||| ||||||||||||||| || || |||||||    
T  12517731 cccacccaa-ttggcaccagggagaatcaaacatgagaccttgaggaggagcaaactccaa 12517790  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 4033307 - 4033339
Alignment:
Q  191 ggggcctaaaacctttgctttagtggcagcccc 223  Q
    |||||||||||||||||||||||||||||||||    
T  4033307 ggggcctaaaacctttgctttagtggcagcccc 4033339  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 36428811 - 36428751
Alignment:
Q  238 cccacccaacttagcacgagggagaatcaaatatgagaccttgaggatgatcatactccaa 298  Q
    ||||||||| || ||||  |||||||||||| ||||||||||||||| || ||||||||||    
T  36428811 cccacccaaattggcaccggggagaatcaaacatgagaccttgaggaggagcatactccaa 36428751  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 49089473 - 49089436
Alignment:
Q  192 gggcctaaaacctttgctttagtggcagcccccttgag 229  Q
    ||||||||| || |||||||||||||||||||||||||    
T  49089473 gggcctaaagcccttgctttagtggcagcccccttgag 49089436  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 11664864 - 11664908
Alignment:
Q  179 taaagaaacttgggggcctaaaacctttgctttagtggcagcccc 223  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||    
T  11664864 taaaaaaactcgggggcctaaaacccttgctttaatggcagcccc 11664908  T

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