View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19485_low_2 (Length: 723)

Name: NF19485_low_2
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19485_low_2
NF19485_low_2
[»] chr7 (5 HSPs)
chr7 (1-707)||(24906970-24907678)
chr7 (1-109)||(24889863-24889971)
chr7 (168-310)||(2212658-2212799)
chr7 (451-526)||(18264575-18264650)
chr7 (458-531)||(23869296-23869369)
[»] chr1 (4 HSPs)
chr1 (403-707)||(31302245-31302545)
chr1 (166-273)||(35154572-35154681)
chr1 (448-516)||(25244983-25245051)
chr1 (448-526)||(25275089-25275167)
[»] chr5 (5 HSPs)
chr5 (167-287)||(11026769-11026889)
chr5 (166-319)||(24403656-24403809)
chr5 (450-526)||(8933907-8933983)
chr5 (448-526)||(5708120-5708198)
chr5 (459-516)||(9272896-9272953)
[»] chr4 (3 HSPs)
chr4 (169-273)||(40350454-40350558)
chr4 (165-301)||(6217640-6217776)
chr4 (449-531)||(41189587-41189669)
[»] chr3 (4 HSPs)
chr3 (168-252)||(14988302-14988387)
chr3 (448-506)||(9129510-9129568)
chr3 (448-506)||(9137617-9137675)
chr3 (448-502)||(34365439-34365493)
[»] chr6 (1 HSPs)
chr6 (448-526)||(26857966-26858044)
[»] chr8 (2 HSPs)
chr8 (169-238)||(7561317-7561386)
chr8 (165-252)||(12768583-12768670)
[»] scaffold0102 (1 HSPs)
scaffold0102 (448-526)||(14385-14463)
[»] chr2 (2 HSPs)
chr2 (448-526)||(17893953-17894031)
chr2 (448-526)||(43323718-43323796)


Alignment Details
Target: chr7 (Bit Score: 662; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 707
Target Start/End: Complemental strand, 24907678 - 24906970
Alignment:
Q  1 ttatgatgaatcttatttcttatgttgttggatactgcattaaataaatgttcatatatttacttctgttattgcttattggttccacattccataaaaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907678 ttatgatgaatcttatttcttatattgttggatactgcattaaataaatgttcatatatttacttctgttattgcttattggttccacattccataaaaa 24907579  T
Q  101 cattgatcagcaataacacgtttcaaagagccaaacccatgtttcaaagagctaacagttaaaggacctgtttggtttggcggcgggaaagctaaaccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24907578 cattgatcagcaataacacgtttcaaagagccaaacccatgtttcaaagagctaacagtgaaaggacctgtttggtttggcggcgggaaagctaaaccca 24907479  T
Q  201 cgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgatttcttgctactgttttgaaaattacaatgccatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  24907478 cgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgatttcttgcaactgttttgaaaattacaacgccatt 24907379  T
Q  301 cgagacatactaaaagatgcagtaacaaattataataaattattacttatcaaggaagatatc--aaatacgtaataacaatgagctcaaggaaaatgtg 398  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||    
T  24907378 cgagacatactaaaagatgcagtaacacattataataaattattacttatcaaggaagatatcaaaaagacgtaataacaatgagctcaaggaaaatgtg 24907279  T
Q  399 gaaattcaaataaccaaccgaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtaca 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907278 gaaattcaaataaccaaccgaggtataaaatgaaagtaacgttacataagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtaca 24907179  T
Q  499 aaatccatctaatccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgcc 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24907178 aaatccatctaatccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcaactctagattataaatgggacgtttaaccttgcc 24907079  T
Q  599 ctttcgtccataattttcttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttctattttcatataacttgcgtgttaagg 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24907078 ctttcgtccataattttcttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttctattttcatataacttgcgtgttaagg 24906979  T
Q  699 ctgtgtact 707  Q
    ||| |||||    
T  24906978 ctgcgtact 24906970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 24889971 - 24889863
Alignment:
Q  1 ttatgatgaatcttatttcttatgttgttggatactgcattaaataaatgttcatatatttacttctgttattgcttattggttccacattccataaaaa 100  Q
    |||||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  24889971 ttatgatgaatcttatttcttatgttgtggggtactacattgaataaatgttcatatatttacttctgttattgcttattggttccactttccatacaaa 24889872  T
Q  101 cattgatca 109  Q
     ||||||||    
T  24889871 aattgatca 24889863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 168 - 310
Target Start/End: Original strand, 2212658 - 2212799
Alignment:
Q  168 ctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgatt 267  Q
    |||||||||||||||| |||||||| |||||||||| || ||| |||||||||||  ||||||| ||||| |||||||||||||||||| |||  |||||    
T  2212658 ctgtttggtttggcggtgggaaagccaaacccacgtctcgaagggcaactttcgtggaaattgagaagctagctttcctagctttcacggcaacatgatt 2212757  T
Q  268 tcttgctactgttttgaaaattacaatgccattcgagacatac 310  Q
    |||||| ||  ||||||||| ||||| ||||||| | ||||||    
T  2212758 tcttgccacaattttgaaaa-tacaacgccattctaaacatac 2212799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 526
Target Start/End: Complemental strand, 18264650 - 18264575
Alignment:
Q  451 tggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    ||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  18264650 tggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 18264575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 531
Target Start/End: Complemental strand, 23869369 - 23869296
Alignment:
Q  458 gtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaattttt 531  Q
    ||||||||| |||||||| ||||||| ||   |||| ||||||||| |||  ||||||| ||||||||||||||    
T  23869369 gtgatccactaaatccattatcatccgattaatccactacaaaatctatcagatccatccaccaaacaattttt 23869296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 403 - 707
Target Start/End: Original strand, 31302245 - 31302545
Alignment:
Q  403 ttcaaataaccaaccgaggtataaaatgaaagtaacgttacagaagggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 502  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  31302245 ttcaaataaccaactgaggtataaaattaaagtaacgttacataagggtggcaatgtgatccaccaaatccatatccatccaatccctcgagtacaaaat 31302344  T
Q  503 ccatctaatccatctaccaaacaatttttcttcttcttatattagaaacgtcgttacatgcgactctagattataaatgggacgtttaaccttgcccttt 602  Q
    ||||||||| ||||||||||||||||||||  ||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31302345 ccatctaattcatctaccaaacaatttttc--cttcttat--tagaaatgtcgttacatgcgactctagattataaatgggacgtttcaccttgcccttt 31302440  T
Q  603 cgtccataattttcttcttcttattagaaatgtaatccacagcttctctctcaaccaaatgcttacttctattttcatataacttgcgtgttaaggctgt 702  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  31302441 cgtccataattttcttcttcttattagaaacgtattccacagcctctctctcagccaaatgcttacttctatttgcatataacttgcgtgttaaggctgc 31302540  T
Q  703 gtact 707  Q
    |||||    
T  31302541 gtact 31302545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 35154681 - 35154572
Alignment:
Q  166 acctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagctt--gctttcctagctttcacgacaatgt 263  Q
    ||||||||||||||||   || ||||| ||||  |||||||||||||||| ||||||  |||| || | ||||  |||||||||||||||||| |||  |    
T  35154681 acctgtttggtttggcaatggaaaagccaaacatacgtttcaaagagcaaatttcgtggaaatggagatgcttttgctttcctagctttcacggcaacat 35154582  T
Q  264 gatttcttgc 273  Q
    ||||||||||    
T  35154581 gatttcttgc 35154572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 448 - 516
Target Start/End: Original strand, 25244983 - 25245051
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 516  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| ||||||||    
T  25244983 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatcaaatccatc 25245051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 25275089 - 25275167
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    |||||||||| |||||||  | || ||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  25275089 gggtggcaatatgatccatgagattcatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 25275167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 167 - 287
Target Start/End: Complemental strand, 11026889 - 11026769
Alignment:
Q  167 cctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgat 266  Q
    ||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||  ||||||| |||||| ||||||||||||||||||||| |||||    
T  11026889 cctgtttggtttggcagtgggaaagccaaacccacgtttcaaagagcgactttcgtggaaattgagaagctttctttcctagctttcacgacaacgtgat 11026790  T
Q  267 ttcttgctactgttttgaaaa 287  Q
    |||||||  | ||||||||||    
T  11026789 ttcttgccgcagttttgaaaa 11026769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 166 - 319
Target Start/End: Original strand, 24403656 - 24403809
Alignment:
Q  166 acctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtga 265  Q
    |||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| || ||||  |  | |||||||||||| |||||||||||| ||||    
T  24403656 acctgtttggtttgacggtgggaaagccaaacccacatttcaaagagcaactttcctagaaatgaagtaacttgctttcctaactttcacgacaacgtga 24403755  T
Q  266 tttcttgctactgttttgaaaattacaatgccattcgagacatactaaaagatg 319  Q
    ||| ||||  | |||||||||| || |||| ||||| | ||||||  |||||||    
T  24403756 ttttttgccgcagttttgaaaaatataatgtcattccaaacatacgtaaagatg 24403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 8933983 - 8933907
Alignment:
Q  450 gtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    |||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  8933983 gtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatccatcaaacaa 8933907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 5708120 - 5708198
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    |||||||||| |||||||  | |||||||  |||||||||  |||| ||||||||||||| |||||||| | |||||||    
T  5708120 gggtggcaatatgatccatgagatccatatccatccaatctatccactacaaaatccatccaatccatccatcaaacaa 5708198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 9272953 - 9272896
Alignment:
Q  459 tgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatc 516  Q
    ||||||| || |||||||  |||||||||| |||| ||||||||||||| ||||||||    
T  9272953 tgatccatcagatccatatccatccaatccatccactacaaaatccatccaatccatc 9272896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 40350558 - 40350454
Alignment:
Q  169 tgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtgattt 268  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||| |||| || |||| || ||||| ||||||||| |||||||||||| |||||||    
T  40350558 tgtttggtttggcagtgggaaagccaaacccacgtttcaaagagcaattttcatagaaatggagaagctcgctttcctaactttcacgacaacgtgattt 40350459  T
Q  269 cttgc 273  Q
     ||||    
T  40350458 tttgc 40350454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 165 - 301
Target Start/End: Complemental strand, 6217776 - 6217640
Alignment:
Q  165 gacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagctttcacgacaatgtg 264  Q
    ||||| ||||||||||||| || ||||| ||||   ||| | |||||||||||||||| |||||  | ||||||  ||||||||||||||||  || |||    
T  6217776 gacctctttggtttggcggtggaaaagccaaactatcgtcttaaagagcaactttcgtgaaaatgaagaagcttagtttcctagctttcacggtaacgtg 6217677  T
Q  265 atttcttgctactgttttgaaaattacaatgccattc 301  Q
     ||||||||  | |||||||||| |||||||| ||||    
T  6217676 gtttcttgccgcagttttgaaaaatacaatgctattc 6217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 531
Target Start/End: Original strand, 41189587 - 41189669
Alignment:
Q  449 ggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaattttt 531  Q
    ||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | ||||||| ||||    
T  41189587 ggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaaatttt 41189669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 14988387 - 14988302
Alignment:
Q  168 ctgtttggttt-ggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagcttt 252  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| |||| |||||||| |||||  |||||||| |||||||||||||    
T  14988387 ctgtttggttttggcggtgggaaagccaaacccacgtttcaaggagctactttcgtgaaaatctaaaagcttactttcctagcttt 14988302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 9129568 - 9129510
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 506  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9129568 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9129510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 9137675 - 9137617
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccat 506  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| |||  ||||||||||||    
T  9137675 gggtggcaaagtgatccaccaaatccatattcatccattccatccgctacaaaatccat 9137617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 34365439 - 34365493
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaat 502  Q
    |||||||||| |||||||||||||| |||| |||||||||| | || ||||||||    
T  34365439 gggtggcaatttgatccaccaaatctataaccatccaatccattcactacaaaat 34365493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 26857966 - 26858044
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    |||||||||| |||||||  | ||||||| ||||||||||| |||| ||||||||||||| |||||||||| |||||||    
T  26857966 gggtggcaatatgatccatgagatccatattcatccaatccatccactacaaaatccatccaatccatctatcaaacaa 26858044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 7561386 - 7561317
Alignment:
Q  169 tgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagctt 238  Q
    ||||||||||| | ||||||||||||||| ||||| | ||||||| |||||||| ||||| |||||||||    
T  7561386 tgtttggtttgaccgcgggaaagctaaactcacgtctaaaagagctactttcgtgaaaatagaaaagctt 7561317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 12768583 - 12768670
Alignment:
Q  165 gacctgtttggtttggcggcgggaaagctaaacccacgtttcaaagagcaactttcgtaaaaattgaaaagcttgctttcctagcttt 252  Q
    ||||||||||||||||||||||||||||  ||| |  | || || |||||||||||||  || | || ||||||||||||||||||||    
T  12768583 gacctgtttggtttggcggcgggaaagccgaactcgtggtttaaggagcaactttcgtggaagtagagaagcttgctttcctagcttt 12768670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 14463 - 14385
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    |||||||||| |||||||  | |||||||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  14463 gggtggcaatatgatccatgagatccatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 14385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 17893953 - 17894031
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    ||||||||||  |||||| ||||||||||  |||||||||| ||||  | || ||||||| ||||||||||||||||||    
T  17893953 gggtggcaataggatccatcaaatccatatacatccaatccatccaccataatatccatccaatccatctaccaaacaa 17894031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 448 - 526
Target Start/End: Original strand, 43323718 - 43323796
Alignment:
Q  448 gggtggcaatgtgatccaccaaatccataatcatccaatccctccagtacaaaatccatctaatccatctaccaaacaa 526  Q
    |||||||||| |||||||  | ||| |||  |||||||||| |||| ||||||||||||| |||||||| | |||||||    
T  43323718 gggtggcaatatgatccatgagatctatatccatccaatccatccactacaaaatccatccaatccatccatcaaacaa 43323796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University