View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_24 (Length: 343)
Name: NF19485_low_24
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 29442391 - 29442305
Alignment:
| Q |
142 |
cttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttattatgatt |
228 |
Q |
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| T |
29442391 |
cttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttattatgatt |
29442305 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 29442253 - 29442182
Alignment:
| Q |
261 |
gagtaactaataatggtggaacattccctcaatttgcctaaagaaaaaatggtggaacctatttaataatat |
332 |
Q |
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| T |
29442253 |
gagtaactaataatgggggaaccttccctcaatttccctaaagaaaaaatggtggaacctatttaataatat |
29442182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 29442513 - 29442464
Alignment:
| Q |
21 |
ttagggtttttcctttcttcctctccatgtacgacccaaatgcaacacag |
70 |
Q |
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| T |
29442513 |
ttagggtttttcctttcttcctctccttgtacgacccaaatgcaacacag |
29442464 |
T |
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