View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_26 (Length: 303)
Name: NF19485_low_26
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 84 - 289
Target Start/End: Complemental strand, 16475282 - 16475076
Alignment:
| Q |
84 |
atgtaaggatactcttttgtaatataaataaatatatataaggggatttcttgtcataatgtcttcttttattgttatatttctttactctgta-gaaat |
182 |
Q |
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| T |
16475282 |
atgtaaggatactcttttgtaatataaataaatatatacaaggggatttcttgtcataatgtcttcttttattgttatatttctttactctgtatgaaat |
16475183 |
T |
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| Q |
183 |
taatttttaaatattgattttatttggaaagtgaatttacaataaaagatattatgtatttcttcaatatttataatcctatttcttcaatggttgtttt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16475182 |
taatttttaaatattgattttatttggaaagtgaatttacaataaaagatattatgtatttcttcaatatttataatcctatttcttcaatggttgcttt |
16475083 |
T |
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| Q |
283 |
ggatgat |
289 |
Q |
| |
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||||||| |
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| T |
16475082 |
ggatgat |
16475076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 17646065 - 17646265
Alignment:
| Q |
90 |
ggatactcttttgtaatataaataaatatatataaggggatttcttgtcataatgtcttcttttattgttatatttctttactctgta-gaaattaattt |
188 |
Q |
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| T |
17646065 |
ggatactcttttgtgatataaataactatatacaaggggatttctggttaaaatgtcttattttatt-ttatattgctttactaagtatggaatatattt |
17646163 |
T |
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| Q |
189 |
ttaaatattgattttatttggaaagtgaatttacaataaaagatattatgtatttcttcaatatttataatcctatttcttc-aatggttgttttggatg |
287 |
Q |
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| T |
17646164 |
ttaaatattgatcttatttggcaagtgatttttcaataaaagatattatggacttcttcaacatttatattcctttttcttcgaaaggttgttttagatg |
17646263 |
T |
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| Q |
288 |
at |
289 |
Q |
| |
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|| |
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| T |
17646264 |
at |
17646265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 143 - 289
Target Start/End: Original strand, 17606040 - 17606189
Alignment:
| Q |
143 |
tgtcttcttttattgttatatttctttactct--gta-gaaattaatttttaaatattgattttatttggaaagtgaatttacaataaaagatattatgt |
239 |
Q |
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||||||||||||||||| |||||||||||| | ||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |
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| T |
17606040 |
tgtcttcttttattgttgtatttctttactatatgtatggaattaatttttaaatattgattttatttggcaagtgaatttgcaataaaagatactatgt |
17606139 |
T |
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| Q |
240 |
atttcttcaatatttataatcctatttcttcaatggttgttttggatgat |
289 |
Q |
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| T |
17606140 |
acttcttcaacatttatattcttatttgttcgaaggttgttttggatgat |
17606189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 17632503 - 17632635
Alignment:
| Q |
84 |
atgtaaggatactcttttgtaatataaataaatatatataaggggatttcttgtcataatgtcttcttttattgttatatttctttactctgta-gaaat |
182 |
Q |
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||||| |||||| |||||||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | ||| |
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| T |
17632503 |
atgtagggatacgattttgtaatataaataaataaagacaaggggatttcttgtcatgatgtcttcttttattgttatatttctttactatgtatggaat |
17632602 |
T |
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| Q |
183 |
taatttttaaatattgattttatttggaaagtga |
216 |
Q |
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| T |
17632603 |
tagttttt-aatattgattttatgtggcaagtga |
17632635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 17650585 - 17650668
Alignment:
| Q |
202 |
ttatttggaaagtgaatttacaataaaagatattatgtatttcttcaatatttataatcctatttcttcaatggttgttttgga |
285 |
Q |
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|||||||| |||| | ||| |||||| ||||||||||| ||||||| ||||| | ||||||||| || |||||||||||||| |
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| T |
17650585 |
ttatttggcaagtaattttgaaataaatgatattatgtacttcttcatcatttagattcctatttcatcgatggttgttttgga |
17650668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 32670523 - 32670608
Alignment:
| Q |
93 |
tactcttttgtaatataaata-aatatatataaggggatttcttgtcataatgtcttcttttattgttatatttctttactctgta |
177 |
Q |
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||||||||||||| ||| ||| |||| |||||| |||| ||||||| |||| ||| ||||||||||||||||||||||| |||| |
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| T |
32670523 |
tactcttttgtaacatatatataataataataaggtgattgcttgtcaaaatgccttattttattgttatatttctttactgtgta |
32670608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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