View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_3 (Length: 652)
Name: NF19485_low_3
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 14 - 636
Target Start/End: Complemental strand, 22996155 - 22995534
Alignment:
| Q |
14 |
cacagataataaaaactaaactgcaactaagtctgatgttgtttcttcatcatttcaagaagagtagcaatgccattcttaatctttgattgctcagcca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22996155 |
cacagataataaaaactaaactgcaactaagtctgatgttgtttcttcatcatttcaagaagagtagcaatgccattcttaatctttgattgctcagcca |
22996056 |
T |
|
| Q |
114 |
tggtttcctcatgttgtttctgcactctactttgaaattcctctttcttcctgatactttccagatgttgttcttccattttcttctcaaatgcttcttg |
213 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22996055 |
tggtttcctcatgctgtttctgcactctactttgaaattcctcttgcttcctgatgctttccagatgttgttcttgcattttcttctcaaatgcttcttg |
22995956 |
T |
|
| Q |
214 |
cttaagttttaaaatccagcagatgagcttccatagcttcagtcttcagcttctgagcatctagatcagcttgtagcttgtcttgataagcaactacctc |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22995955 |
cttaagttttaaa-tccagcagatgagcttccatagcttcagtcttcagcttctgagcatctagatcagcttgtagcttgtcttgataagcaactacctc |
22995857 |
T |
|
| Q |
314 |
agggtcttgactcttgagaattataggctatggcttcttgaagaagttagctagccaaaccttgaagtccagacttcactacttctgggacttcaggaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22995856 |
agggtcttgactcttgagaattataggctatggcttcttgaagaagttagctagccaaaccttgaagtccagacttcactacttctgggacttcaggaat |
22995757 |
T |
|
| Q |
414 |
tggagcttcttgtgtaggctcaagctccttgatcaactctgaatactcaatctgccttgagatgtgagttctaagctcaacttcatccatgcttttgtag |
513 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22995756 |
tgcagcttcttgtgtaggctcaagctccttgatcaactctgaatactcaatctgccttgagatgtgagttctaagctcaacttcatccatgcttttgtag |
22995657 |
T |
|
| Q |
514 |
acttcagaaaactagtcttgtagagcttattgttgagaggtaacatccatttcttgaagattatccagagtagcatcaaccaactaacttcctgagctta |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22995656 |
acttcagaaaactagtcttgtagagcttattgttgagaggtaacatccatttcttgaagattatccagagtagcatcaaccaactaacttcctgagctta |
22995557 |
T |
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| Q |
614 |
tcccatttaataatatagtggat |
636 |
Q |
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||||||||||||||||||||||| |
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| T |
22995556 |
tcccatttaataatatagtggat |
22995534 |
T |
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