View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19485_low_31 (Length: 281)
Name: NF19485_low_31
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_31 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 33298582 - 33298311
Alignment:
| Q |
10 |
aatatccactaatatcaagcaaataatgtccaacaacatttccnnnnnnngggaaaggtccacgtaactatgtttgtgtcttattgagaaagagttacat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33298582 |
aatatccactaatatcaagcaaataatgtcca-caacatttccaaaaaaagggaaaggtccacgtaactatgtttgtgtcttattgagaaagagttacat |
33298484 |
T |
|
| Q |
110 |
gtaatcagtaactacgtagaatacattacacaatatcatgcattagttaaacaaattccaaggttcaaaaacagcatgccatggttgtaaaaattgtctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
33298483 |
gtaatcagtaactacgtagaatacattacacaatatcatgcattagttaaacaaattccaaggttcaacaacagcatgccatggttgtaaaaatggtctc |
33298384 |
T |
|
| Q |
210 |
atggatcaagagacgtgaaagactt-aaactttgaatattaaacaagtttctatagctcctccaacaaaagcc |
281 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
33298383 |
atggatcaagagacgtgaaagacttaaaactttgaatactaaacaagtttctatacctcctccaacaaaagcc |
33298311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University