View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_4 (Length: 607)
Name: NF19485_low_4
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 14740514 - 14739939
Alignment:
| Q |
19 |
agtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttggaagaacgtaaacgagatcgctattgaaagttccaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740514 |
agtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttggaagaacgtaaacgagatcgctattgaaagttccaca |
14740415 |
T |
|
| Q |
119 |
ttaaggacattgaacattcattctaaatcttcttttttggattatgatcattatgactgttgtacagttacaatcaatgctccgaatatttcgtccttaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740414 |
ttaaggacattgaacattcattctaaatcttcttttttggattatgatcattatgactgttgtacagttacaatcaatgctccgaatatttcgtccttaa |
14740315 |
T |
|
| Q |
219 |
cttgcacaagcactccgacactaaaatttgtcgtggttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740314 |
cttgcacaagcactccgacactaaaatttgtcgtggttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaaca |
14740215 |
T |
|
| Q |
319 |
atatcgtgctgagtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttc |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740214 |
atatcgtgctgagtgtctatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttc |
14740115 |
T |
|
| Q |
419 |
tcgtcatttttcattttctttagtatatttagaaatgatgcctattgacattgtgcctttatttttatgcnnnnnnnaatcattgcttatttctgtgtat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14740114 |
tcgtcatttttcattttctttagtatatttagaaatgatgcctattgacattgtgcctttatttttatgctttttttaatcattgcttatttctgtgtat |
14740015 |
T |
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| Q |
519 |
cacacaacaactgatattggtttgcttcctccacaagtctctttacttttcagcggatactctccatctccttcct |
594 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740014 |
cacaaaacaactgatattggtttgcttcctccacaagtctctttacttttcagcggatactctccatctccttcct |
14739939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 14728979 - 14728926
Alignment:
| Q |
29 |
cttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttgg |
82 |
Q |
| |
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||||| |||||||||||||| ||| ||||||||| ||||||||| ||| ||||| |
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| T |
14728979 |
cttttgtctgggtgccctgtcctacaagagttgaccttgtataaatttttttgg |
14728926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 594
Target Start/End: Original strand, 17585690 - 17586273
Alignment:
| Q |
20 |
gtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttggaagaacgtaaacgagatcgctattgaaagttccacat |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||| ||||||||| |||||||| |
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| T |
17585690 |
gtgcaacaacttttctctgggtgccctgtgctagaagagttgatcttgtataattgtatttggcagtacataaacgagatcactattgaaaattccacat |
17585789 |
T |
|
| Q |
120 |
taaggacattgaacattcattctaaatcttcttttttggattatgatcattatgactgttgtacagttacaatcaatgctccgaatatttcgtccttaac |
219 |
Q |
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| ||||||||| |||||| ||||| |||||| ||| ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| | |
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| T |
17585790 |
aatggacattgaccattcactctaacccttcttgtttagattatgatcattatgactgtcatacagttaagattgatgctccgaatatttcgtccttatc |
17585889 |
T |
|
| Q |
220 |
ttgcacaagcactccgacactaaaatttgtcgtggttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaa |
319 |
Q |
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|||| |||||||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17585890 |
ttgctcaagcactccgacactaaaatttgtcctggttaatctgatctccattgttgatgcaaatattggtcttgagtttgactatccacaaagcgaacaa |
17585989 |
T |
|
| Q |
320 |
tatcgtgctgagtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttct |
419 |
Q |
| |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
17585990 |
tatgctgctcagtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatctttgtttgttttct |
17586089 |
T |
|
| Q |
420 |
cgtcatttttcattttctttagtatatttagaaatgatgcctattgacattg-tgcctttatttttatg----cnnnnnnnaatcattgctta--tttct |
512 |
Q |
| |
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|||||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||| |||| || |||| ||||||| ||||| |
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| T |
17586090 |
cgtcattttt-attttctttagtatatttacaagtgatgcctattgacattgttgccttttgttttgtgttttttttaattaatcgttgcttatttttct |
17586188 |
T |
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| Q |
513 |
gtgtatcacacaacaa---ctgatattggtttgcttcctccacaagtctctttacttttcagcggatactctccatctccttcct |
594 |
Q |
| |
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||||| |||||| || ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17586189 |
atgtatgacacaataatcgtcgatcttggtttgcttcctccattagtctctttacttttcggcggatactctccatctccttcct |
17586273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 17594508 - 17594561
Alignment:
| Q |
29 |
cttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttgg |
82 |
Q |
| |
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||||| |||||||||||||| ||| ||||||||| ||||||||| ||| ||||| |
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| T |
17594508 |
cttttgtctgggtgccctgtcctacaagagttgaccttgtataaatttttttgg |
17594561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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