View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_46 (Length: 202)
Name: NF19485_low_46
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 46892058 - 46891886
Alignment:
| Q |
15 |
aatatacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatgcaaatataagttatcatata-tttacacacaaaca |
113 |
Q |
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| T |
46892058 |
aatatacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatgcaaatataagttatcatatattttacacacaagcg |
46891959 |
T |
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| Q |
114 |
agcaagannnnnnnaaatataaggtctgcgaccatgactgtggctgagacgtacagatgcaaatataagttat |
186 |
Q |
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| T |
46891958 |
aacaagatttttttaaatataaggtctgcgaccatgactgtggctgagacgtacagatgcaaatataagttat |
46891886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 46874257 - 46874101
Alignment:
| Q |
15 |
aatatacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatgcaaatataagttatcatatatttacacacaaacaa |
114 |
Q |
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| T |
46874257 |
aatatacatggaaaccaaaaagttgcaattgttataatcatcttgta-attttgctcacaatatgcaaatataagttatcatacactcgcacacaagcga |
46874159 |
T |
|
| Q |
115 |
gcaagannnnnnnaaatataaggtctgcgaccatgactgtggctgagacgtacagatg |
172 |
Q |
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| T |
46874158 |
acaagatttttttaaatataaggtctaggaccacaactgtggctgagacgtacagatg |
46874101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 46865431 - 46865354
Alignment:
| Q |
18 |
atacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatgcaaatataagttatca |
95 |
Q |
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| T |
46865431 |
atacatggaaaccaaacagtttaaattgttacaatcatcttgaattctttgttcacaatatgtaaatacaagtaatca |
46865354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 46901250 - 46901214
Alignment:
| Q |
18 |
atacatggaaaccaaacagtttcatttgttataatca |
54 |
Q |
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| T |
46901250 |
atacatggaaaccaaacagcttcaattgttataatca |
46901214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 27300716 - 27300613
Alignment:
| Q |
18 |
atacatggaaaccaaacagtttcatttgttataatcatcttgtactttttgctcacaatatgcaaatat-aagttatcatatatttacacacaaacaagc |
116 |
Q |
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||||||| |||||||| ||||||| ||||||||||||||||||| ||||| || ||||| ||||||| || |||||||| ||| ||| ||||| ||| |
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| T |
27300716 |
atacatgaaaaccaaatagtttcaattgttataatcatcttgtaaattttgtacaaaatattcaaatataaacttatcatacattcacatacaaatgagc |
27300617 |
T |
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| Q |
117 |
aaga |
120 |
Q |
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|||| |
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| T |
27300616 |
aaga |
27300613 |
T |
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