View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_5 (Length: 601)
Name: NF19485_low_5
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 358 - 595
Target Start/End: Complemental strand, 17856031 - 17855794
Alignment:
| Q |
358 |
taggtttttgtatctggttgggtcttgatttgggaatgaacccaggggttctatttacagtgtttctggccccctttagctgtgacaccctgagagcctt |
457 |
Q |
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| T |
17856031 |
taggtttttgtatctggttaggtcttgatttgggaatgaacccaggggttctatttacagtgtttctggccccctatagccgtaacaacctgagagcctt |
17855932 |
T |
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| Q |
458 |
ttccttgagctttagccagtttgttcctatagtggcgggctcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgac |
557 |
Q |
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| T |
17855931 |
ttccttgagctttagccagtttgttcctatagtggcgggcgcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgac |
17855832 |
T |
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| Q |
558 |
tctggtttaatagataagggtggcctcatgcacctttg |
595 |
Q |
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| T |
17855831 |
tctggtttaatagataagggtggcctcatgcacctttg |
17855794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 17857005 - 17856629
Alignment:
| Q |
15 |
tgagcaatatagattcataacaaatgtgtctaa-tcatgtaaaatagtatttaatagaagtttgtttttt-cagtttttctattcttatttgttctgctt |
112 |
Q |
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| T |
17857005 |
tgagcaatatagattcataacaaatgtgtctaaatcatgtaaaatagtatttaatagaagtttgtttttttcagtttttctattcttatttgttctgctt |
17856906 |
T |
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| Q |
113 |
cttgtgattcggggtgcatgtc---------------------ttgtccacgaaaacaaacatattatgacagtgatgttaacaaaataaactagttaat |
191 |
Q |
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| T |
17856905 |
cttgtgattcggggtgcatgtcttgctgaaaagcaattatgggttggccacgaaaacaaacatataatgacagttatgttaacaaaataaactagttaat |
17856806 |
T |
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| Q |
192 |
atcagtaagataaagaaca-------------tgcacgaaacaggataagcaacttactgatatatca-------aaagcatggcattattctattaaaa |
271 |
Q |
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| T |
17856805 |
atcagtaagataaagaacatgctagactcaactgcacgaaacaggataagcaacttaccgatatatcagtaagataaagcatggcattattctattaaaa |
17856706 |
T |
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| Q |
272 |
aacacgacgaacattttcatcatacttcactgtaatacgataatagcatatgtctgtaaaaacagtttttaaaatca |
348 |
Q |
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| T |
17856705 |
aacacgacgaacattttcatcatacttcactgtaatacgataatagcatatgtctgtaaaaacagtttttaaaatca |
17856629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 409 - 595
Target Start/End: Complemental strand, 34647366 - 34647180
Alignment:
| Q |
409 |
tatttacagtgtttctggccccctttagctgtgacaccctgagagccttttccttgagctttagccagtttgttcctatagtggcgggctcgtcaagctt |
508 |
Q |
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| T |
34647366 |
tatttatagtgtttttggccccctttagtcgtaacaacgtgagagctttttccttgagctttcgccggtttggtcctataatggcgggcgcgtcaagctt |
34647267 |
T |
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| Q |
509 |
atctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgactctggtttaatagataagggtggcctcatgcacctttg |
595 |
Q |
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| T |
34647266 |
atctgtatccatatgtcttccctaaaggccctggattgagctgtttgactttagtttaagagataagggcggcctcgtgcccctttg |
34647180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 595
Target Start/End: Complemental strand, 33929606 - 33929491
Alignment:
| Q |
480 |
gttcctatagtggcgggctcgtcaagcttatctgtatctgtatgtctcgcctgaaggccctggacttggctgtttgactctggtttaatagataagggtg |
579 |
Q |
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| T |
33929606 |
gttcctatagtgacgggcacgtcaagcttatgtgtaaccttatgtctcgcttgaaggccatggatttagcagttcgactttggtttacgagataagggca |
33929507 |
T |
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| Q |
580 |
gcctcatgcacctttg |
595 |
Q |
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| T |
33929506 |
gccacttgcacctttg |
33929491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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