View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_7 (Length: 519)
Name: NF19485_low_7
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 139 - 508
Target Start/End: Complemental strand, 18939928 - 18939562
Alignment:
| Q |
139 |
agagttccgctgttttttacagctccatcagtgttgattttaacagcacctgcaggaggtggagtccagcaagtgacagaaataacaatgttgagtttgg |
238 |
Q |
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| T |
18939928 |
agagttccgctgtttttaacagccccatcagtgttgattttaacagcacctgcaggaggtggagtccagcaagtgacagaaataacaatgttgagtttgg |
18939829 |
T |
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| Q |
239 |
atgcatttggaactctcaaattcaaa-aagaccaagcttctctgatatttgcaaccatagcatatatcctttgcagagagttggatgtggaaggcttatt |
337 |
Q |
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| T |
18939828 |
atgcatttggaactctcaaattcaaagaagaccaagcttctctgatatttgcaaccatagcataaatcctttgcagagaggtggatgtggaaggcatatt |
18939729 |
T |
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| Q |
338 |
gctgttgaaaatgaaattatttctagcacaccaatatagcatcaatggagacaacaaagactatgttgggaactagcatatgacaatgatgtctttttga |
437 |
Q |
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| T |
18939728 |
gttgttgaaaatgaaattatttctagcacaccaatatagtatcaatggagac----aagactatgttgggaactagcatatgacaatgatgtctttttga |
18939633 |
T |
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| Q |
438 |
caaaaataaaacgacattcatttattcattctaatttagactatattagatacaataacatgttcaatatt |
508 |
Q |
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| T |
18939632 |
caaaaataaaacaacattccttcattcattcaaattgagactacatcagatacaataacatgttcaatatt |
18939562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 18940316 - 18940192
Alignment:
| Q |
17 |
ttaacaaggaaaataggagctgaataaacaa----cattagcattattaaagttaaaaccatccttggcaagcatatcagctgctacattagcttccctg |
112 |
Q |
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| T |
18940316 |
ttaacaaggaaaataggagctgaataaacaaacaacattagcattattaaagttaaaaccatccttggcaagcatatcagctgctacattagcttccctg |
18940217 |
T |
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| Q |
113 |
catatgtgatggatagtggcacttg |
137 |
Q |
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| T |
18940216 |
catatgtgatggatagtggcacttg |
18940192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 465
Target Start/End: Complemental strand, 21431917 - 21431883
Alignment:
| Q |
431 |
tttttgacaaaaataaaacgacattcatttattca |
465 |
Q |
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| T |
21431917 |
tttttgacaaaaataaaacgacattcattcattca |
21431883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 468
Target Start/End: Original strand, 7612828 - 7612865
Alignment:
| Q |
431 |
tttttgacaaaaataaaacgacattcatttattcattc |
468 |
Q |
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| T |
7612828 |
tttttgacaaaaacaaaacgatattcatttattcattc |
7612865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 36144061 - 36144021
Alignment:
| Q |
426 |
atgtctttttgacaaaaataaaacgacattcatttattcat |
466 |
Q |
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|||| ||||||||||||||||||| | |||||||||||||| |
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| T |
36144061 |
atgtttttttgacaaaaataaaacaatattcatttattcat |
36144021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 500
Target Start/End: Original strand, 12199467 - 12199532
Alignment:
| Q |
431 |
tttttgacaaaaataaaacgacattcatttattcattctaatttagactatattagatacaataacatgt |
500 |
Q |
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| T |
12199467 |
ttttttacacaaacaaaacgatattcatttattca----aattgagagtatattagatacaataacatgt |
12199532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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