View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19485_low_9 (Length: 487)
Name: NF19485_low_9
Description: NF19485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19485_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 44997231 - 44996764
Alignment:
| Q |
1 |
ctgcacaaaaattatttatttcattacaatttagtacataactcattcaagattatatgtttcaggtatcaagaaagcagtggaagagctcaatccagtt |
100 |
Q |
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| T |
44997231 |
ctgcacaaaaattatttatttcattacaatttagtacataactcattcaagattatatgtttcaggtatcaagaaagcagtggaagagctcaatccagtt |
44997132 |
T |
|
| Q |
101 |
agaagaacagtttttggcatgctctacaaacggtaataattaagttgctattctatacttgtataaatatgtgacaactgacaattatatggattttggt |
200 |
Q |
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| T |
44997131 |
agaagaacagtttttggcatgctctacaaacggtaat---taagttgctattctatacttgtataaatatgtgacaactgacagttatatggattttggt |
44997035 |
T |
|
| Q |
201 |
ctaatgtaatatttccattgcacacctatatttttatgcagtaaacttggttggatgaagaaaggatacaaacattgcaatgcatcaccatttgctgatc |
300 |
Q |
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| T |
44997034 |
ctaatgtaatatttccattgcacacctatatttttatgcagtaaacttggttggatgaagaaaggatacaaacattgcaatgcatcaccatttgctgatc |
44996935 |
T |
|
| Q |
301 |
tattagcatttagaaaggttgtttctcctctttactacataagtttcaaaactactattatctacaaagtgatcctagctatttgtacaaaaggctaaat |
400 |
Q |
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| T |
44996934 |
tattagcatttagaaaggttgtttctcctctttactacatgagtttcaaaactactattatctacaaagtgatcctagctatttgtacaaaaggctaaat |
44996835 |
T |
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| Q |
401 |
tttcaactactgcaattcctctttgtt-nnnnnnntaaat-aaataacttgacatcttttacctatggatt |
469 |
Q |
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| T |
44996834 |
tttcaactactgcaattcctctttgttaaaaaaaataaataaaataacttgacatcttttacctatggatt |
44996764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 38767271 - 38767342
Alignment:
| Q |
58 |
tgtttcaggtatcaagaaagcagtggaagagctcaatccagttagaagaacagtttttggcatgctctacaa |
129 |
Q |
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||||| |||||||||||||||||||| | | || |||||||| || |||||||||||||||||||||||||| |
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| T |
38767271 |
tgttttaggtatcaagaaagcagtggcacaactaaatccagtgaggagaacagtttttggcatgctctacaa |
38767342 |
T |
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