View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_high_11 (Length: 485)

Name: NF19486_high_11
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_high_11
NF19486_high_11
[»] chr4 (18 HSPs)
chr4 (282-485)||(41497771-41497975)
chr4 (17-206)||(41497985-41498175)
chr4 (174-366)||(47838941-47839133)
chr4 (223-365)||(54358171-54358312)
chr4 (212-364)||(37674000-37674151)
chr4 (210-365)||(18375390-18375543)
chr4 (266-365)||(17847541-17847639)
chr4 (210-364)||(24683122-24683275)
chr4 (210-365)||(41633263-41633416)
chr4 (210-365)||(23348112-23348269)
chr4 (217-365)||(4512161-4512309)
chr4 (263-364)||(41878615-41878715)
chr4 (210-336)||(26179238-26179363)
chr4 (217-365)||(54021241-54021391)
chr4 (323-365)||(52726030-52726072)
chr4 (330-363)||(47282226-47282259)
chr4 (210-282)||(30508988-30509060)
chr4 (265-309)||(47281587-47281630)
[»] chr8 (18 HSPs)
chr8 (210-365)||(29314045-29314199)
chr8 (210-365)||(36473048-36473202)
chr8 (210-365)||(15561913-15562067)
chr8 (210-365)||(41322575-41322729)
chr8 (207-365)||(39112691-39112848)
chr8 (210-365)||(2001694-2001847)
chr8 (282-365)||(33888965-33889048)
chr8 (210-308)||(4851779-4851876)
chr8 (186-336)||(11643303-11643455)
chr8 (282-363)||(11653712-11653793)
chr8 (285-366)||(37919507-37919588)
chr8 (210-365)||(34392154-34392299)
chr8 (319-365)||(4824296-4824342)
chr8 (210-365)||(1005635-1005792)
chr8 (210-301)||(8551535-8551625)
chr8 (319-361)||(34392112-34392154)
chr8 (328-365)||(13357629-13357666)
chr8 (174-206)||(1196504-1196536)
[»] chr2 (21 HSPs)
chr2 (210-365)||(13686039-13686193)
chr2 (210-365)||(25414959-25415113)
chr2 (210-365)||(14940986-14941141)
chr2 (210-364)||(19898965-19899118)
chr2 (225-361)||(41464902-41465037)
chr2 (223-365)||(45093148-45093289)
chr2 (210-365)||(28429327-28429478)
chr2 (210-366)||(35323473-35323628)
chr2 (210-345)||(3810288-3810422)
chr2 (263-366)||(28716315-28716417)
chr2 (210-364)||(42263877-42264030)
chr2 (210-344)||(40126520-40126653)
chr2 (210-365)||(35676270-35676430)
chr2 (320-365)||(2752614-2752659)
chr2 (224-307)||(29689277-29689359)
chr2 (282-365)||(36690818-36690903)
chr2 (324-365)||(24413862-24413903)
chr2 (172-206)||(13685988-13686022)
chr2 (319-361)||(13685997-13686039)
chr2 (217-305)||(2752692-2752779)
chr2 (210-238)||(23454386-23454414)
[»] chr1 (19 HSPs)
chr1 (210-365)||(31032696-31032850)
chr1 (211-365)||(44714807-44714960)
chr1 (210-364)||(47550837-47550990)
chr1 (210-365)||(16254900-16255054)
chr1 (210-365)||(20808993-20809147)
chr1 (210-365)||(34475945-34476099)
chr1 (210-356)||(29095530-29095675)
chr1 (210-365)||(42480167-42480323)
chr1 (210-357)||(1270217-1270363)
chr1 (282-362)||(9098571-9098651)
chr1 (207-363)||(34807979-34808134)
chr1 (294-362)||(41647356-41647424)
chr1 (263-365)||(4624444-4624538)
chr1 (223-350)||(2958710-2958831)
chr1 (282-365)||(45010316-45010399)
chr1 (210-274)||(4194812-4194876)
chr1 (210-305)||(24135801-24135893)
chr1 (210-241)||(41646621-41646652)
chr1 (174-206)||(20808944-20808976)
[»] chr6 (6 HSPs)
chr6 (207-365)||(7646773-7646930)
chr6 (210-351)||(25935554-25935694)
chr6 (210-338)||(29487541-29487668)
chr6 (210-301)||(12607123-12607213)
chr6 (289-365)||(12607030-12607107)
chr6 (282-365)||(17366939-17367016)
[»] chr3 (13 HSPs)
chr3 (210-374)||(521754-521917)
chr3 (210-365)||(50612873-50613027)
chr3 (210-363)||(45166272-45166424)
chr3 (210-345)||(20912213-20912347)
chr3 (210-365)||(31788351-31788505)
chr3 (210-365)||(36517560-36517714)
chr3 (210-365)||(39145297-39145451)
chr3 (210-363)||(38176390-38176542)
chr3 (220-365)||(23642978-23643122)
chr3 (211-365)||(51297022-51297177)
chr3 (210-365)||(52546788-52546942)
chr3 (210-365)||(34624486-34624629)
chr3 (210-336)||(1561283-1561408)
[»] chr5 (19 HSPs)
chr5 (210-365)||(4391844-4391998)
chr5 (226-365)||(5481414-5481552)
chr5 (210-365)||(32891220-32891374)
chr5 (210-363)||(37093912-37094064)
chr5 (210-365)||(3456798-3456949)
chr5 (207-338)||(28434244-28434374)
chr5 (217-365)||(34286646-34286793)
chr5 (210-365)||(228069-228223)
chr5 (266-365)||(8692610-8692708)
chr5 (210-329)||(35672345-35672462)
chr5 (292-365)||(42148957-42149030)
chr5 (210-313)||(38614231-38614333)
chr5 (263-345)||(40925934-40926015)
chr5 (265-345)||(31644727-31644808)
chr5 (214-308)||(29223513-29223606)
chr5 (321-365)||(43141519-43141563)
chr5 (210-244)||(31644684-31644718)
chr5 (264-321)||(6614289-6614345)
chr5 (177-250)||(42148869-42148944)
[»] chr7 (6 HSPs)
chr7 (210-365)||(23991949-23992103)
chr7 (210-344)||(27425773-27425906)
chr7 (179-365)||(42195390-42195577)
chr7 (213-309)||(22326907-22327002)
chr7 (282-365)||(8307639-8307723)
chr7 (178-274)||(25686376-25686475)
[»] scaffold0002 (1 HSPs)
scaffold0002 (210-364)||(492712-492865)
[»] scaffold0339 (1 HSPs)
scaffold0339 (300-365)||(13378-13442)
[»] scaffold0132 (2 HSPs)
scaffold0132 (210-241)||(582-613)
scaffold0132 (210-241)||(8542-8573)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 282 - 485
Target Start/End: Complemental strand, 41497975 - 41497771
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgt--cttgaaaaattcttgatgctatttttatagagaaatagcattttcccgtatattattctc 379  Q
    |||||||||||||||||||||||||||| |||||||||  |||||| |||| |||||||||||||| ||||||||||||||||||| |||||||||||||    
T  41497975 aacaaataaatcatgcaattaaaacttatcaactgtgtgtcttgaataatttttgatgctatttttttagagaaatagcattttcc-gtatattattctc 41497877  T
Q  380 ttaacgctctcaaagttgagctccgtgtatattttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagttaaacaaactaattg 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41497876 ttaacgctctcaaagttgagctccgtgtatattttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagttaaacaaactaattg 41497777  T
Q  480 gataat 485  Q
    ||||||    
T  41497776 gataat 41497771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 41498175 - 41497985
Alignment:
Q  17 agaggaaatatcaacaatactaataaaagtcaattattttatctttactttttatggttttatgagtgtgactaaattcaaaacatttgtatttgtgacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41498175 agaggaaatatcaacaatactaataaaagtcaattattttatctttacttttcatggttttatgagtgtgactaaattcaaaacatttgtatttgtgacc 41498076  T
Q  117 atacaagtattgctacttgcttctct-nnnnnnnnngtattgctacttgctagtatattatgagcaatgctatatctttagaaaaataaca 206  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41498075 atacaagtattgctacttgcttctctaaaaaaaaaagtattgctacttgctagtatattatgagcaatgctatatctttagaaaaataaca 41497985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 174 - 366
Target Start/End: Complemental strand, 47839133 - 47838941
Alignment:
Q  174 tatgagcaatgctatatctttagaaaaataaca--aaaaataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaa 271  Q
    ||||||||||||||||||| ||||||||||||   || |||||||||||||||| ||||||| ||||||| ||| ||||||| ||| | | || ||||||    
T  47839133 tatgagcaatgctatatctctagaaaaataacttcaagaataaagagcagtcaaccacaatgtactatttgccacaatttaaggaggtgtggccgaaaaa 47839034  T
Q  272 tagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttccc 366  Q
    ||||||||||| |||| | |||||||||||||| || |||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  47839033 tagaaaatgaa-caaaaacatcatgcaattaaatctcaccagctgtgtcttgaaaa-ttcttgatgctatttttatagagaaatagcatgttccc 47838941  T

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Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 223 - 365
Target Start/End: Original strand, 54358171 - 54358312
Alignment:
Q  223 caatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtctt 322  Q
    ||||||||||||||||||| ||| ||||||| | | | | |||||||||||| || |||| ||||||||||||||||||||||||| |||||| ||||||    
T  54358171 caatcacaatgcactatttgccacaatttaagggggtgtggctgaaaaataggaagtgaa-caaataaatcatgcaattaaaacttgccaactatgtctt 54358269  T
Q  323 gaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  54358270 gaaaaattcttgatgctatttttctagagaaataacattttcc 54358312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 212 - 364
Target Start/End: Complemental strand, 37674151 - 37674000
Alignment:
Q  212 taaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttacc 311  Q
    |||||||||||||||||||||| ||||||||| | |||| |||||| | | ||||||||||| ||| | || |||||||||||||||||||||||||  |    
T  37674151 taaagagcagtcaatcacaatgtactatttactacaattcaaagaggtgtggctgaaaaataaaaagttaa-caaataaatcatgcaattaaaacttgtc 37674053  T
Q  312 aactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttc 364  Q
    |   |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  37674052 acacgtgtcttgaaaaattcttgatgctatttttctagagaaatatcattttc 37674000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 18375543 - 18375390
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||| || ||||||||||||||||||||| ||| |||| || ||| | | |||||||| ||| || |||| |||||||||||||||||||||||||     
T  18375543 aataaagtgcggtcaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaa-taggaagtgaa-caaataaatcatgcaattaaaacttg 18375446  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  18375445 ccagttgtgtcttgaaaaattcttgatgctatttttctagagaaataacattttcc 18375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 266 - 365
Target Start/End: Complemental strand, 17847639 - 17847541
Alignment:
Q  266 gaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  17847639 gaaaaatagaaagtgaa-caaataaatcatgcaattaaaacttgccaactgtgtcttgaaaaattcttgatgctatttttcgagagaaataacattttcc 17847541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 210 - 364
Target Start/End: Original strand, 24683122 - 24683275
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||||| ||| |||| |   || | |  ||||||||||| || |||| ||||||||||||||||||||||||||    
T  24683122 aataaagagcagccaatcacaatgcactatttgccacaattcaggaaggtgtgactgaaaaataggaagtgaa-caaataaatcatgcaattaaaactta 24683220  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttc 364  Q
     ||| |||||||||||||||||||||| |||||||| || ||||||| |||||||    
T  24683221 tcaagtgtgtcttgaaaaattcttgatactatttttctaaagaaataacattttc 24683275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 41633263 - 41633416
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| |||||||||||||||| || ||| |||| || ||| | | |||||||||||| || |||| ||||||||| ||| |||||||| ||     
T  41633263 aataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaaaataggaagtgaa-caaataaat-atgtaattaaaatttg 41633360  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     || || ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41633361 tcagctttgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 41633416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 23348269 - 23348112
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaa--aatgaaacaaataaatcatgcaattaaaact 307  Q
    |||||||| || ||||||||||| ||||||||||||||||| || ||| | | |||||||||||| |  ||   ||||||||||||||||||||||||||    
T  23348269 aataaagaacactcaatcacaatacactatttaccataattcaaggaggtgtggctgaaaaataggaggaagtgaacaaataaatcatgcaattaaaact 23348170  T
Q  308 taccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |  |   ||| |||||||||||| |||||||||||||| |||||||||||||||||||    
T  23348169 tgtcggttgtttcttgaaaaattattgatgctatttttctagagaaatagcattttcc 23348112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 365
Target Start/End: Complemental strand, 4512309 - 4512161
Alignment:
Q  217 agcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactg 316  Q
    ||||||||||||||||  ||||||| ||| |||| || ||||| |  ||||||||||| || | |||||||||||| ||||||||||||||| ||| |||    
T  4512309 agcagtcaatcacaatatactatttgccacaattcaaggagatgtgactgaaaaataggaagt-aaacaaataaatgatgcaattaaaacttgccacctg 4512211  T
Q  317 tgtcttgaaaaattcttgatgctat-ttttatagagaaatagcattttcc 365  Q
     || ||||||||||||||||||||| |||| |||||||||| ||||||||    
T  4512210 agtattgaaaaattcttgatgctattttttctagagaaataacattttcc 4512161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 263 - 364
Target Start/End: Original strand, 41878615 - 41878715
Alignment:
Q  263 gctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattt 362  Q
    |||||||||||| || | ||||||||||||||||||||||||||||  ||  | ||||||||||||||||||||||||||||| || | |||||||||||    
T  41878615 gctgaaaaataggaagt-aaacaaataaatcatgcaattaaaacttgtcagttatgtcttgaaaaattcttgatgctatttttctaaataaatagcattt 41878713  T
Q  363 tc 364  Q
    ||    
T  41878714 tc 41878715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 26179363 - 26179238
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| |||||||| ||||||||||| || |||| || ||| | | |||||||||||| || || ||||||||||||||  |||| ||||||     
T  26179363 aataaagagcagccaatcacagtgcactatttaacacaattcaaggaggtgtggctgaaaaataggaagtg-aacaaataaatcatcaaattgaaacttg 26179265  T
Q  310 ccaactgtgtcttgaaaaattcttgat 336  Q
     || |||||| || |||||||||||||    
T  26179264 acagctgtgttttaaaaaattcttgat 26179238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 365
Target Start/End: Complemental strand, 54021391 - 54021241
Alignment:
Q  217 agcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaa---ttaaaacttaccaa 313  Q
    ||||| ||||||||||||||||| | ||| ||||||| ||| | | | ||||||||||||| | ||||||||||| ||   ||   |||||||||  ||     
T  54021391 agcagccaatcacaatgcactatgtgccacaatttaaggaggtgtggttgaaaaatagaaagt-aaacaaataaagcaattaaaaattaaaacttgtcag 54021293  T
Q  314 ctgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    || | |||| |||||||||||||||||||||| |||||||||| ||||||||    
T  54021292 ctttatcttaaaaaattcttgatgctatttttctagagaaataacattttcc 54021241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 52726030 - 52726072
Alignment:
Q  323 gaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  52726030 gaaaaattcttgatgctatttttctagagaaatagcattttcc 52726072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 47282226 - 47282259
Alignment:
Q  330 tcttgatgctatttttatagagaaatagcatttt 363  Q
    |||||||||||||||| |||||||||||||||||    
T  47282226 tcttgatgctatttttctagagaaatagcatttt 47282259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 30508988 - 30509060
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaa 282  Q
    ||||||||||||||||| ||||| |||||||| ||  |||  | |||||| || ||||||||||| |||||||    
T  30508988 aataaagagcagtcaattacaatacactatttgccgcaatacacagagatgtaactgaaaaataggaaatgaa 30509060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 47281630 - 47281587
Alignment:
Q  265 tgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||| || |||| ||||||||||||||||||||||||||    
T  47281630 tgaaaaataggaagtgaa-caaataaatcatgcaattaaaactta 47281587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 29314045 - 29314199
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||| |||||||||||||||||||||| ||| ||||||| ||| | |  |||||||||||||| || | ||||||||| ||||||||||||||||    
T  29314045 aataaagagaagtcaatcacaatgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtgga-caaataaataatgcaattaaaactta 29314143  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  29314144 ccaactgtgtcttgaaaaattcttgatactatttttttagagaaatagcattttcc 29314199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 36473202 - 36473048
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||||||||| | ||||||||  || ||||||| ||| | | |||||||||||| || |||| ||||||||||||||||||||||||||    
T  36473202 aataaagagcagtcaatcacagtacactatttgacacaatttaaggaggtgtggctgaaaaataggaagtgaa-caaataaatcatgcaattaaaactta 36473104  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  36473103 ccaattgtgtcttgaaaaattcttgatgttatttttctagagaaatagcattttcc 36473048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 15562067 - 15561913
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||| | |||||||||  |||||| ||||| ||| |||| || ||| | | |||||||||||| || |||| |||||||||||| ||||||||||||     
T  15562067 aataaataacagtcaatcgtaatgcattatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaa-caaataaatcatacaattaaaacttg 15561969  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  15561968 ccaactgtatcttgaaaaattcttgatgctatttttctagataaatagcattttcc 15561913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 41322575 - 41322729
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||||||||||||||||||||   | |||| || ||| | | |  ||||||||| || | || ||| |||||||||||||||||||||     
T  41322575 aataaagagcagtcaatcacaatgcactatttgtgaaaattcaaggaggtgtggtagaaaaataggaagttaa-caattaaatcatgcaattaaaacttg 41322673  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41322674 ctaactatgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 41322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 365
Target Start/End: Original strand, 39112691 - 39112848
Alignment:
Q  207 aaaaataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaac 306  Q
    ||||||||||||||  ||||||||||||||||||| |||||||| || ||| |   ||||||||||||||| |||| |||||||||||| |||||||||     
T  39112691 aaaaataaagagcaaccaatcacaatgcactatttgccataattcaaggaggtgcggctgaaaaatagaaagtgaa-caaataaatcatccaattaaaat 39112789  T
Q  307 ttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    || |||| ||||||||||||||   || ||||||||||| ||||||  |||||||||||    
T  39112790 ttgccaattgtgtcttgaaaaaaatttaatgctatttttctagagatgtagcattttcc 39112848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 2001694 - 2001847
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||||||| ||| ||| |||| ||| ||||||| ||| | | |||| |||||||| | |||| ||||||||||||| |||||||||||     
T  2001694 aataaagagcagtcaatca-aatacacgatttgccacaatttaaggaggtgtggctggaaaatagatagtgaa-caaataaatcatgtaattaaaacttg 2001791  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     || |||||||||||||||   |||||||||||||| |||||||||| ||||||||    
T  2001792 gcagctgtgtcttgaaaaaaatttgatgctatttttctagagaaataacattttcc 2001847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 33888965 - 33889048
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||| |||||||||||||||  ||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  33888965 aacaaataaattatgcaattaaaacttgtcagttgtttcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 33889048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 4851779 - 4851876
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactt 308  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||| ||  | | |||||||||||| |||| ||||||||||||||||||||||||||||    
T  4851779 aataaagagcagtcaatcataatgcactattttccacaatttaaggaagtgtggctgaaaaataggaaat-aaacaaataaatcatgcaattaaaactt 4851876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 11643303 - 11643455
Alignment:
Q  186 tatatctttagaaaaataaca--aaaaataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaa 283  Q
    ||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||  |  | ||| |||||||||  || || ||    
T  11643303 tatatctctagaaaaataacatcaagaataaagagcagtcaatcacaatgcactatttaccacaatttaagaaagtgtagttgaaaaatacgaagtg-aa 11643401  T
Q  284 caaataaatcatgcaattaaaacttacca-actgtgtcttgaaaaattcttgat 336  Q
    |||||||||||| ||||||||| || |||  ||||||||  |||||||||||||    
T  11643402 caaataaatcatacaattaaaatttgccatgctgtgtctgaaaaaattcttgat 11643455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 11653793 - 11653712
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcatttt 363  Q
    ||||||||||||||| |||||||||||  || | ||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  11653793 aacaaataaatcatgtaattaaaacttgtcagccgtgtcttaaaaaattcttgatgttatttttgtagagaaatagcatttt 11653712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 37919588 - 37919507
Alignment:
Q  285 aaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttccc 366  Q
    |||||||| | |||||||||||||  ||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||    
T  37919588 aaataaattacgcaattaaaacttgtcaactgtgttttgataaattcttgatactatttttctagagaaatagcattttccc 37919507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 34392154 - 34392299
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||| |||||||||||| ||||||| ||| |||||||  || | | ||||||||||  ||| |||| ||||||||||||||||||||||||||    
T  34392154 aataaagagcactcaatcacaatgtactatttgccacaatttaagaaggtgtggctgaaaaatgaaaagtgaa-caaataaatcatgcaattaaaactta 34392252  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
             | |  |||||||||| || |||||||| |||||||||||||||||||    
T  34392253 ---------tttgaaaaaattcttaattctatttttttagagaaatagcattttcc 34392299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 4824296 - 4824342
Alignment:
Q  319 tcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  4824296 tcttgaaaaattcttaatgctatttttctagagaaatagcattttcc 4824342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 1005635 - 1005792
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||| | ||||| | ||||||| ||||  || ||||||||||| | |  ||||||||||| || |||| ||||||||| |||||||||||||||     
T  1005635 aataaagagtaatcaattataatgcaccatttgacacaatttaaagaggtgtgactgaaaaataggaagtgaa-caaataaattatgcaattaaaacttg 1005733  T
Q  310 cca-actgtgtcttgaaaaattcttgatgcta--tttttatagagaaatagcattttcc 365  Q
     ||   |||| ||| ||||| | |||||||||  ||||| |||||||||||||||||||    
T  1005734 tcagtttgtgccttaaaaaaattttgatgctatttttttttagagaaatagcattttcc 1005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 8551535 - 8551625
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaatt 301  Q
    |||||||| ||  ||||||||||||| | ||| ||| |||| || ||||| | | | |||||||||||||| ||||||||||||||||||||    
T  8551535 aataaagaacaaccaatcacaatgcattgtttgccacaattaaaggagatgtggttaaaaaatagaaaatg-aacaaataaatcatgcaatt 8551625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 34392154 - 34392112
Alignment:
Q  319 tcttgaaaaattcttgatgctatttttatagagaaatagcatt 361  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  34392154 tcttgaaaaattcttgatgttatttttttagagatatagcatt 34392112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 13357666 - 13357629
Alignment:
Q  328 attcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  13357666 attcttgatgctatttttctagataaatagcattttcc 13357629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 1196504 - 1196536
Alignment:
Q  174 tatgagcaatgctatatctttagaaaaataaca 206  Q
    ||||||||||||||||||| |||||||||||||    
T  1196504 tatgagcaatgctatatctctagaaaaataaca 1196536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 13686039 - 13686193
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| |||||||||||||||| || ||| |||| || ||| | | |||||||||||| || |||| |||||||||||||||||||||||||     
T  13686039 aataaagagcagccaatcacaatgcactacttgccacaattcaaggaggtgtggctgaaaaataggaagtgaa-caaataaatcatgcaattaaaacttg 13686137  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  13686138 ccaattgtgtcttaaaaaattcttgatgctatttttctagagaaatagcattttcc 13686193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 25414959 - 25415113
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||| ||||||||||||||||||||||| ||| |||| || ||| | | ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  25414959 aataaagaacagtcaatcacaatgcactatttgccacaattcaaggaggtatggctgaaaaaaagaaagtgaa-caaataaatcatgcaattaaaactta 25415057  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     || |||||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  25415058 tcagctgtgtcttgaaaaattctttatactatttttctagagatatagcattttcc 25415113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 14941141 - 14940986
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagct-gaaaaatagaaaatgaaacaaataaatcatgcaattaaaactt 308  Q
    |||||||||||||||||||||||||||||||| ||| |||| |||||| | |  || ||||||||  || |||| ||||||||||||| |||||||||||    
T  14941141 aataaagagcagtcaatcacaatgcactatttgccacaattcaaagaggtgtgactcgaaaaataagaagtgaa-caaataaatcatgaaattaaaactt 14941043  T
Q  309 accaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14941042 gccagttgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattttcc 14940986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 364
Target Start/End: Original strand, 19898965 - 19899118
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||| |||||  || |||| || ||| | | |||||||| ||| || |||| |||||||||||||||||||||||||     
T  19898965 aataaagagcagccaatcacaatgcattatttgtcacaattcaaggaggtattgctgaaaattaggaagtgaa-caaataaatcatgcaattaaaacttg 19899063  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttc 364  Q
    |||  ||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  19899064 ccagttgtgtcttgaaaaattcgtgatgctatttttctagagaaatagcattttc 19899118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 225 - 361
Target Start/End: Complemental strand, 41465037 - 41464902
Alignment:
Q  225 atcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttga 324  Q
    ||||||||||||||||| ||  |||| || ||| | | | ||||||||||||| |||| |||||||||||||||||||||||||  ||||||||||||||    
T  41465037 atcacaatgcactatttgccgcaattcaaggaggtgtggttgaaaaatagaaagtgaa-caaataaatcatgcaattaaaacttgtcaactgtgtcttga 41464939  T
Q  325 aaaattcttgatgctatttttatagagaaatagcatt 361  Q
    ||||||||||||| ||||||| |||||||||| ||||    
T  41464938 aaaattcttgatgttatttttctagagaaataacatt 41464902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 365
Target Start/End: Complemental strand, 45093289 - 45093148
Alignment:
Q  223 caatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtctt 322  Q
    ||||||||||||||||||| ||| |||| || ||| | |  ||||||||||| || | |||||| |||||||||||||||||| || |||||||| ||||    
T  45093289 caatcacaatgcactatttgccacaattcaaggaggtatgactgaaaaataggaagt-aaacaattaaatcatgcaattaaaatttcccaactgtatctt 45093191  T
Q  323 gaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     |||||||||||||||||||||| |||||||||| ||||||||    
T  45093190 aaaaaattcttgatgctatttttctagagaaataacattttcc 45093148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 28429327 - 28429478
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||| ||||||||| ||||| ||||||||||| ||| | |  ||||||||||  || |||| |||||||||||||||||||||||||     
T  28429327 aataaagagcagccaaacacaatgcattatttgccataatttaaggaggtgtgactgaaaaataagaagtgaa-caaataaatcatgcaattaaaacttg 28429425  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     ||   ||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  28429426 tca---gtgtcatgaaaaattcttgatgctatttttctaaagaaatagcattttcc 28429478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 366
Target Start/End: Complemental strand, 35323628 - 35323473
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||| |||||||||||||| |||||||| ||| |||| || ||| | | ||||||||||| ||| |||| || |||||||||| |||||||||||     
T  35323628 aataaagaacagtcaatcacaatacactatttgccacaattcaatgaggtgtggctgaaaaataaaaactgaa-catataaatcatgtaattaaaacttg 35323530  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttccc 366  Q
     |||||||||||  |||||||||| || |||||||| |||||||||| |||||||||    
T  35323529 tcaactgtgtctgaaaaaattcttaatactatttttctagagaaataacattttccc 35323473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 345
Target Start/End: Complemental strand, 3810422 - 3810288
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||| || |||| |||||||||||||| ||| |||| || ||| | |  ||||||||||  || |||| |||||||||||||||||||||||||     
T  3810422 aataaagagtagccaattacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaagtgaa-caaataaatcatgcaattaaaacttg 3810324  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctattttt 345  Q
    ||| |||||||||||||| |||||||||||||||||    
T  3810323 ccagctgtgtcttgaaaatttcttgatgctattttt 3810288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 28716417 - 28716315
Alignment:
Q  263 gctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattt 362  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  28716417 gctgaaaaataggaagtgaa-caaataaataatgcaattaaaacttgccagttgtgtcttgaaaaattcttgatgctatttttctagaaaaataacattt 28716319  T
Q  363 tccc 366  Q
    ||||    
T  28716318 tccc 28716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 210 - 364
Target Start/End: Original strand, 42263877 - 42264030
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| |||||||||||||| ||||  || |||| || ||| | | |||||||||||| ||||| ||||||||||| |||||||||||||||     
T  42263877 aataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaataggaaatg-aacaaataaattatgcaattaaaacttg 42263975  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttc 364  Q
     |    ||||||||||||| | |||||||||||||| |||||||||| |||||||    
T  42263976 actgtcgtgtcttgaaaaaattttgatgctatttttttagagaaataacattttc 42264030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 344
Target Start/End: Complemental strand, 40126653 - 40126520
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||| ||| ||||||||||||| || |||||||  |||| ||| |||||||||| || || |||||||||||||| ||||||||| ||     
T  40126653 aataaagagcagtcattcataatgcactatttatcacaatttaagaagatatagttgaaaaataggaagtg-aacaaataaatcatacaattaaaatttg 40126555  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttt 344  Q
      | |||| |||| ||||||||| |||||||||||    
T  40126554 tgagctgtatcttaaaaaattctcgatgctatttt 40126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 35676430 - 35676270
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatg-------caatta 302  Q
    |||||||||||||||| ||||||||||||||| ||| |||| || ||| | |  ||||||||||  || |||| ||||||||| |||       ||||||    
T  35676430 aataaagagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaaaatatgaagtgaa-caaataaat-atgaagtgaacaatta 35676333  T
Q  303 aaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||| |||  |||||||  ||||| |||||||||||||||| |||||||||||||||||||    
T  35676332 aaacttgccagttgtgtctaaaaaaaatcttgatgctatttttctagagaaatagcattttcc 35676270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 2752659 - 2752614
Alignment:
Q  320 cttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  2752659 cttgaaaaattcttgatgctatttttctagagaaatagcaatttcc 2752614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 29689359 - 29689277
Alignment:
Q  224 aatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaact 307  Q
    |||||||||||||||||| | |||||| || ||| |||  ||||||||||| || || ||| ||||||||||||||||||||||    
T  29689359 aatcacaatgcactatttgctataattcaaggaggtttgactgaaaaataggaagtg-aactaataaatcatgcaattaaaact 29689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 36690903 - 36690818
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaa--attcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||||| | |||||||| ||  || ||||||||||||||  |||||| ||| ||||||| || ||||||||||||||||    
T  36690903 aacaaataaatcaagtaattaaaatttgtcagctgtgtcttgaaaaatattcttaatgttatttttctaaagaaatagcattttcc 36690818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 24413862 - 24413903
Alignment:
Q  324 aaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  24413862 aaaaattattgatgctatttttctagagaaatagcattttcc 24413903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 13685988 - 13686022
Alignment:
Q  172 attatgagcaatgctatatctttagaaaaataaca 206  Q
    ||||||||||||||||||||| |||||||||||||    
T  13685988 attatgagcaatgctatatctctagaaaaataaca 13686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 13686039 - 13685997
Alignment:
Q  319 tcttgaaaaattcttgatgctatttttatagagaaatagcatt 361  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  13686039 tcttgaaaaattcttgatgttatttttctagagatatagcatt 13685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 2752779 - 2752692
Alignment:
Q  217 agcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaa 305  Q
    ||||| ||||||||||||||||||| ||| |||| || ||||| |  ||||||||||  || || || ||||||||||| |||||||||    
T  2752779 agcagccaatcacaatgcactatttgccacaattcaaggagatctgactgaaaaataagaagtg-aataaataaatcatacaattaaaa 2752692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 23454414 - 23454386
Alignment:
Q  210 aataaagagcagtcaatcacaatgcacta 238  Q
    |||||||||||||||||||||||||||||    
T  23454414 aataaagagcagtcaatcacaatgcacta 23454386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 31032850 - 31032696
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||| ||||||||||||||||||||||| ||| | || || ||| | | ||||||||||||||| |||| |||||||||||||||||||||||||     
T  31032850 aataaagatcagtcaatcacaatgcactatttgccacagttcaaggaggtgtggctgaaaaatagaaagtgaa-caaataaatcatgcaattaaaacttg 31032752  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     ||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  31032751 tcaactgtatcttgaaaaattcttgatgctatttttctagaaaaataacattttcc 31032696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 211 - 365
Target Start/End: Complemental strand, 44714960 - 44714807
Alignment:
Q  211 ataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttac 310  Q
    ||||||||||||||||||||||||| ||||| ||| |||| || ||||| | ||||||||||| ||||| ||| ||||||||||| |||||||||||| |    
T  44714960 ataaagagcagtcaatcacaatgcattatttgccacaattcaacgagatgtggctgaaaaataaaaaataaaa-aaataaatcatacaattaaaacttgc 44714862  T
Q  311 caactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||| | |||||||||||||||||| |||||||| |||| ||||| ||||||||    
T  44714861 caactatatcttgaaaaattcttgatactatttttctagaaaaataacattttcc 44714807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 364
Target Start/End: Original strand, 47550837 - 47550990
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||  ||| |||||||||||||| ||| ||||||| ||| | |  || |||||||| ||||||| || ||||||||||||||||||||||     
T  47550837 aataaagagcagcaaattacaatgcactatttgccacaatttaaggaggtgtgactaaaaaataggaaatgaa-catataaatcatgcaattaaaacttg 47550935  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttc 364  Q
    ||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  47550936 ccagctgtttcttgaaaaattcttgatgctatttttctagagaaataacattttc 47550990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 16254900 - 16255054
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||| ||| | | |||||| ||||| || |||| |||||||||||| ||||||||  ||     
T  16254900 aataaagatcagccaatcacaatgcactatttgccataatttaaggaggtgtggctgaataataggaagtgaa-caaataaatcatacaattaaattttg 16254998  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     ||  ||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  16254999 tcagttgtgtattgaaaaattcttgatgctatttttctagagaaatagcattttcc 16255054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 20808993 - 20809147
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||||||||||||||||| ||||| ||| |||| || ||||| | |||||||| ||| || |||| | |||||| |||| |||||||||||     
T  20808993 aataaagagcagtcaatcacaatgcattatttgccacaattcaaggagatgtggctgaaaactaggaagtgaa-cgaataaaccatgtaattaaaacttg 20809091  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||| | || ||||||||||||||||||||||||||| ||||||||||  |||||||    
T  20809092 ccacccgtatcttgaaaaattcttgatgctatttttctagagaaataaaattttcc 20809147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 34475945 - 34476099
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||| | ||  |||| || ||| | | |||||||||||| || |||| ||||| |||||||||||||||||||     
T  34475945 aataaagagcagccaatcacaatgcactatctgccccaattcaaggaggtgtggctgaaaaataggaagtgaa-caaatcaatcatgcaattaaaacttg 34476043  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     || || |||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  34476044 tcagctttgtcttgaaaaattcttgatactatttttctagagaaatagccttttcc 34476099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 29095675 - 29095530
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||||| ||| |||| || ||| | | |||||||||||| || |||| |||| | ||||||||||||||||||     
T  29095675 aataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaa-caaagatatcatgcaattaaaacttg 29095577  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaata 356  Q
     ||||| ||||||||||| || |||||||||||||| ||||||||||    
T  29095576 gcaactatgtcttgaaaattttttgatgctatttttctagagaaata 29095530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 42480167 - 42480323
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||| |||||||||| |||||| | ||||||||| |||| || ||| | | ||||||||||||||||||||  |||||||| |||||||||||||||     
T  42480167 aataaatagcagtcaattacaatgtattatttaccacaattcaatgaggtgtggctgaaaaatagaaaatgaat-aaataaattatgcaattaaaacttg 42480265  T
Q  310 ccaactgtgtct--tgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |   ||||||||  |||||||||||||||||||||||| |||||||||| ||||||||    
T  42480266 catgctgtgtctcttgaaaaattcttgatgctatttttctagagaaataacattttcc 42480323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 210 - 357
Target Start/End: Original strand, 1270217 - 1270363
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||  ||||| ||||||||||||| ||| |||| ||  || | | |||||||||||| || ||||  ||||||||| ||||||||||||||     
T  1270217 aataaagagcaaccaatctcaatgcactatttgccacaattcaagaaggtgtggctgaaaaataggaagtgaat-aaataaatcgtgcaattaaaacttg 1270315  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatag 357  Q
     |||||||||||||||||||| |||||||||||||| |||||||||||    
T  1270316 tcaactgtgtcttgaaaaatttttgatgctatttttctagagaaatag 1270363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 9098651 - 9098571
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattt 362  Q
    |||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||| |||||||| |||||||    
T  9098651 aacaaataaatcatgcaattaaaacttgtcagctgtgttttgaaaaattcttgatgctatttttctagagaaaaagcattt 9098571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 363
Target Start/End: Original strand, 34807979 - 34808134
Alignment:
Q  207 aaaaataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaac 306  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||| | | |||||||||||  || || || ||||||||||||||||||||||    
T  34807979 aaaaataaagagcagtcaatcacaatgtactatttatcataatttaaggaggtgtggctgaaaaatatgaagtg-aataaataaatcatgcaattaaaac 34808077  T
Q  307 ttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcatttt 363  Q
    || | |  ||| ||||||||||    | ||||||||||| || ||||||| ||||||    
T  34808078 ttgctagttgtctcttgaaaaaaaaattatgctatttttctaaagaaataacatttt 34808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 41647356 - 41647424
Alignment:
Q  294 atgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattt 362  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41647356 atgcaattaaaacttgtcaactgtgtcttgaaaaattcttgatgctatttttctagagaaatagcattt 41647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 4624444 - 4624538
Alignment:
Q  263 gctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattt 362  Q
    |||||||||||| || |||| |||||||||||||||||||||||||       | |||||||| ||||||||||||||||||| ||||||||||||||||    
T  4624444 gctgaaaaataggaagtgaa-caaataaatcatgcaattaaaactt-------gagtcttgaataattcttgatgctatttttctagagaaatagcattt 4624535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 2958831 - 2958710
Alignment:
Q  223 caatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtctt 322  Q
    ||||||||||||||||||| ||| |||| || ||| | | ||||||||||||  | || |||||||||||||||||||||     | ||| |||||||||    
T  2958831 caatcacaatgcactatttgccaaaattcaaggaggtgtggctgaaaaatagggagtg-aacaaataaatcatgcaatta-----tgccagctgtgtctt 2958738  T
Q  323 gaaaaattcttgatgctatttttataga 350  Q
    ||||||||||||||| ||||||| ||||    
T  2958737 gaaaaattcttgatgttatttttctaga 2958710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 45010316 - 45010399
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||||||||||||||| ||  ||  ||||| ||||||||||||| ||||||||||| |||||||||| ||| ||||    
T  45010316 aacaaataaatcatgcaattaaaatttgtcagatgtgttttgaaaaattctttatgctatttttctagagaaataacatcttcc 45010399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 4194812 - 4194876
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatag 274  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||||| |  |||||||||||    
T  4194812 aataaagaacagtcaatcacaatatactatttaccataattcaaagagatatgactgaaaaatag 4194876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 24135801 - 24135893
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaa 305  Q
    |||||||||||| |||||||||||||  |||| ||| |||| || ||| | | |||||||||||| || |||| ||||||||||||||||||||||    
T  24135801 aataaagagcagccaatcacaatgca--atttgccacaattcaaggaggtgtggctgaaaaataggaagtgaa-caaataaatcatgcaattaaaa 24135893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 41646621 - 41646652
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactattt 241  Q
    ||||||||||||||||||||||||||||||||    
T  41646621 aataaagagcagtcaatcacaatgcactattt 41646652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 20808944 - 20808976
Alignment:
Q  174 tatgagcaatgctatatctttagaaaaataaca 206  Q
    ||||||||||||||||||| |||||||||||||    
T  20808944 tatgagcaatgctatatctctagaaaaataaca 20808976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 207 - 365
Target Start/End: Complemental strand, 7646930 - 7646773
Alignment:
Q  207 aaaaataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaac 306  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||| || ||  | |  ||||||||||| ||||||| |||||||||||||||||||||||    
T  7646930 aaaaataaagagcagccaatcacaatgcactatttgccacaattcaaggatgtgtgactgaaaaataggaaatgaa-caaataaatcatgcaattaaaac 7646832  T
Q  307 ttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    || |||  ||||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  7646831 ttgccagatgtgtcttgaaaaattcctgatactatttttctagagaaatagcattttcc 7646773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 351
Target Start/End: Original strand, 25935554 - 25935694
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||   ||||| |||| |||||||  || ||||||| ||| | | ||||||||||||||| ||||| || ||||||||| |||||||||||     
T  25935554 aataaagagcatctaatcataatgtactatttgtcacaatttaaggaggtgtggctgaaaaatagaaagtgaaagaa-taaatcatgtaattaaaacttg 25935652  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagag 351  Q
    ||| |||||||||||||||||||||||||||||||| |||||    
T  25935653 ccagctgtgtcttgaaaaattcttgatgctatttttctagag 25935694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 210 - 338
Target Start/End: Complemental strand, 29487668 - 29487541
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| || ||| | | ||||||||||||  | |||| ||||||||||||||||| || |||||    
T  29487668 aataaagagtagtcaatcacattgcactatttgccacaattaaatgaggtgtggctgaaaaatagggagtgaa-caaataaatcatgcaatcaacactta 29487570  T
Q  310 ccaactgtgtcttgaaaaattcttgatgc 338  Q
    |||||||||||| ||||||||||||||||    
T  29487569 ccaactgtgtctggaaaaattcttgatgc 29487541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 12607213 - 12607123
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaatt 301  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||| ||| | |  |||||||||||||| || ||||||||||||||||||||    
T  12607213 aataaagagcagtcaatcacagtgcactatttgccacaatttaaggaggtgtgactgaaaaatagaaagtg-aacaaataaatcatgcaatt 12607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 12607107 - 12607030
Alignment:
Q  289 aaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctattttt-atagagaaatagcattttcc 365  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||||  |||||||| | ||||||||    
T  12607107 aaatcatgcaattaaaacttatcaattgtgtcttaaaaaattcttgatactatttttcctagagaaacaacattttcc 12607030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 17366939 - 17367016
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||  |||||||||||||||| |     ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  17366939 aacaaataatgcatgcaattaaaacttgc-----gtgtcttgaaaaatt-ttgatgctatttttctagagaaatagcattttcc 17367016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 210 - 374
Target Start/End: Complemental strand, 521917 - 521754
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||||| ||| |||| || ||| | | |||||||||||| || |||| |||||||||||||||||||||||||     
T  521917 aataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaa-caaataaatcatgcaattaaaacttg 521819  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcccgtatatta 374  Q
     |||||||||||| |||||||||||||| ||||| | |||| ||||||||||||||  |||||||    
T  521818 acaactgtgtcttaaaaaattcttgatgatatttgtctagataaatagcattttccattatatta 521754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 50613027 - 50612873
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||||| ||| |||| || ||| | |  |||||||||| ||| |||| ||||||||| |||||||||||||||     
T  50613027 aataaagagcagccaatcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaatataaagtgaa-caaataaattatgcaattaaaacttg 50612929  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     || |||||| ||||||||||||||||||| |||||||||||||||| ||||||||    
T  50612928 tcagctgtgtattgaaaaattcttgatgctgtttttatagagaaataacattttcc 50612873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 210 - 363
Target Start/End: Original strand, 45166272 - 45166424
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||||| ||| |||| || |||   | ||||||||||||  | ||  ||||||||||||||||||||||| ||     
T  45166272 aataaagagcagccaatcacaatgcactatttgccacaattcaaggaggcgtggctgaaaaatagggagtg-gacaaataaatcatgcaattaaaatttg 45166370  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcatttt 363  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||| ||||||    
T  45166371 ccaactgcgtcttgaaaaattcttgatgctatttttctagagaaataacatttt 45166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 20912213 - 20912347
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||||| ||||||||||||||  |||||||||| ||| | |  ||||||||||| || |||| ||||||||||||||||||||||||||    
T  20912213 aataaagagcagtcaataacaatgcactatttgtcataatttaaggaggtgtgactgaaaaataggaagtgaa-caaataaatcatgcaattaaaactta 20912311  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctattttt 345  Q
     || || |||||| ||||||||||||||||||||||    
T  20912312 tcagctatgtctttaaaaattcttgatgctattttt 20912347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 31788351 - 31788505
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||||||||| |||| || ||| | |   |||||||||| || |||| |||||||||| |||| |||||||||     
T  31788351 aataaagagcagccaatcacaatgcactatttaccacaattcaaggaggtgtgattgaaaaataggaagtgaa-caaataaatcttgcagttaaaacttg 31788449  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     ||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  31788450 tcaattgtgtcttgaaaaattcttgaagttatttttatagagaaataacattttcc 31788505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 36517560 - 36517714
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||||||||||||||||||||||| ||| |||| || ||| | |   | |||||||| || |||| |||||||||||||||||||||||||     
T  36517560 aataaagagcagtcaatcacaatgcactatttgccacaattcaaggaggtgtgaataaaaaataggaagtgaa-caaataaatcatgcaattaaaacttg 36517658  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||| ||||||||||||||| | ||||| | |||| ||||||||||||||    
T  36517659 ccaactgtgttttgaaaaattcttgaagttatttatctagataaatagcattttcc 36517714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 39145297 - 39145451
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||| ||||| |||| |||||||||||||| | | |||| || ||| | |  ||||||||||| ||||||| |||| ||||||| ||||||||||||     
T  39145297 aataaaaagcagccaattacaatgcactatttgctacaattcaatgaggtatgactgaaaaataggaaatgaa-caaagaaatcatacaattaaaacttg 39145395  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     |||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  39145396 acaactgtgtcttgacaaattcttgatgctatttttctagagaaatagcattttcc 39145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 363
Target Start/End: Complemental strand, 38176542 - 38176390
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||| ||||||||||||| ||  |||| || ||| | | |||||||||||  || |||| |||||||| ||||||||||||||||     
T  38176542 aataaagagcagccaatcgcaatgcactatttgcctcaattcaaggaggtgtggctgaaaaatatgaagtgaa-caaataaaacatgcaattaaaacttg 38176444  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcatttt 363  Q
    |||||||||||||||||||||||| ||||||||||| || ||||||| ||||||    
T  38176443 ccaactgtgtcttgaaaaattcttaatgctatttttctaaagaaatatcatttt 38176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 220 - 365
Target Start/End: Complemental strand, 23643122 - 23642978
Alignment:
Q  220 agtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgt 319  Q
    |||||||||||||||||||||| ||| |||| || ||| | |  || |||||||| || |||| ||||||||| ||| |||||||| ||  || ||||||    
T  23643122 agtcaatcacaatgcactatttgccacaattcaaggaggtgtgactaaaaaataggaagtgaa-caaataaattatggaattaaaatttgtcagctgtgt 23643024  T
Q  320 cttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  23643023 cttgaaaaattcttgatgctatttttctagagaaatagcattttcc 23642978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 365
Target Start/End: Complemental strand, 51297177 - 51297022
Alignment:
Q  211 ataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttac 310  Q
    ||||||| ||| ||| ||||||||||||||| ||| |||| ||| || | |  |||||||||||||| |||| |||||||||||||||||||||| |||     
T  51297177 ataaagaacagccaaccacaatgcactatttgccacaattcaaaaaggtatgactgaaaaatagaaagtgaa-caaataaatcatgcaattaaaatttat 51297079  T
Q  311 caac-tgtgtcttgaaaaattcttgatgcta-tttttatagagaaatagcattttcc 365  Q
    |||| || ||||||||||| | ||||||||| ||||| |||||||||| ||||||||    
T  51297078 caacttgcgtcttgaaaaaattttgatgctattttttttagagaaataacattttcc 51297022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 52546788 - 52546942
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| |||||||||||  ||||||  || |||| || ||| | |   |||||||||| ||||||| ||||||||| |||||||||||||||     
T  52546788 aataaagagcagccaatcacaatgtgctatttgtcacaattcaatgaggtgtgagtgaaaaataggaaatgaa-caaataaattatgcaattaaaacttg 52546886  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
      |  ||||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  52546887 taaggtgtgtcttggaaaattcttgatgcaatttttctagagaaatagcattttcc 52546942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 34624629 - 34624486
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| ||||||||||||||||||||||| ||||| | ||  | | |||||||||||| || || ||||||||||||||||||||||||        
T  34624629 aataaagagcagccaatcacaatgcactatttaccacaatttgaggaagtgtggctgaaaaataggaagtg-aacaaataaatcatgcaattaaaa---- 34624535  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
           | |||| |||||||||||||||||||||| |||||||||| ||||||||    
T  34624534 -------tttcttaaaaaattcttgatgctatttttctagagaaataacattttcc 34624486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 1561408 - 1561283
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||  ||||||||||||||||||| ||| |||| || ||| | | |||||||||||| || |||| |||||||||||||||||| ||||||     
T  1561408 aataaagagcaaccaatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaataggaagtgaa-caaataaatcatgcaattgaaacttg 1561310  T
Q  310 ccaactgtgtcttgaaaaattcttgat 336  Q
     || ||||||||  |||||||||||||    
T  1561309 tcagctgtgtctgaaaaaattcttgat 1561283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 4391998 - 4391844
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| |||| |||||||||| ||| ||| |||| || ||| | | |||||||||||| || |||| ||||||||| |||||||||||||||     
T  4391998 aataaagagcagccaattacaatgcactgtttgccacaattcaaggagctgtggctgaaaaataggaagtgaa-caaataaattatgcaattaaaacttg 4391900  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  4391899 ccagctgtgtcttgaaaaattcttgatgctatttttctagagaaattgcattttcc 4391844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 226 - 365
Target Start/End: Original strand, 5481414 - 5481552
Alignment:
Q  226 tcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaa 325  Q
    |||||||||| ||||| ||| |||| | |||||| | ||||||||||| ||| |||| ||||||||||||||| |||||| |||||||||||||||| ||    
T  5481414 tcacaatgcattatttgccacaattcatagagatgtggctgaaaaataaaaagtgaa-caaataaatcatgcagttaaaatttaccaactgtgtcttaaa 5481512  T
Q  326 aaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||||||||||| ||||||||||  |||||||    
T  5481513 aaattcttgatgctatttttctagagaaataatattttcc 5481552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 32891220 - 32891374
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||| ||||| ||||||||||||||||||| ||| |||| || ||| | | ||| ||| |||| || |||| |||||||||||||||||||||| ||     
T  32891220 aataaaaagcagccaatcacaatgcactatttgccacaattcaaggaggtgtggctaaaagataggaagtgaa-caaataaatcatgcaattaaaatttg 32891318  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     |||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  32891319 tcaactgtgtcttgaaaaattgttgatgctatttttctagataaatagcattttcc 32891374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 363
Target Start/End: Complemental strand, 37094064 - 37093912
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||||||||| || ||||||| | | |||| || ||| | |  ||||||||||| || |||| ||||||||| |||||||||||||||     
T  37094064 aataaagagcagtcaatcacattgtactatttgcaacaattcaaggaggtgtgactgaaaaataggaagtgaa-caaataaattatgcaattaaaacttg 37093966  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcatttt 363  Q
     ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  37093965 tcaactgtgtcttgaaaaattcttgatgctatttttctagaaaaataacatttt 37093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 3456798 - 3456949
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||| |||||||||||||||| ||| |||| || ||| | |  ||||||||||| || || |||||||||||||||||||||||||||     
T  3456798 aataaagagcagtcactcacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataggaagtg-aacaaataaatcatgcaattaaaacttg 3456896  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     |   ||||||   |||||||||||||||||||||| |||| ||||||||||||||    
T  3456897 tcggttgtgtc---aaaaattcttgatgctatttttctagaaaaatagcattttcc 3456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 338
Target Start/End: Original strand, 28434244 - 28434374
Alignment:
Q  207 aaaaataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaac 306  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||  |||| |  ||| ||||||||||||| || ||||||||||||||||||||||    
T  28434244 aaaaataaagagcagccaattacaatgcactatttaccacaatttaagaagatgtgactgtaaaatagaaaatg-aataaataaatcatgcaattaaaac 28434342  T
Q  307 ttaccaactgtgtcttgaaaaattcttgatgc 338  Q
    |  | |||||| |||  |||||||||||||||    
T  28434343 tcgctaactgtatctaaaaaaattcttgatgc 28434374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 365
Target Start/End: Original strand, 34286646 - 34286793
Alignment:
Q  217 agcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactg 316  Q
    ||||| ||||||| ||||||||||| ||| |||| |   || | | |||||||||||| ||||||| |||||||||||||||||||||| ||  ||  ||    
T  34286646 agcagccaatcacgatgcactatttgccacaattaatgaaggtgtggctgaaaaataggaaatgaa-caaataaatcatgcaattaaaatttgtcagttg 34286744  T
Q  317 tgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||| | |||||||||||||| |||||||||| ||||||||    
T  34286745 tgtcttgaaaaaattttgatgctatttttctagagaaataacattttcc 34286793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 228069 - 228223
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||| || |||||||||||||||||||||||| |||| || ||| | |  ||||||| |||||| || |||||||| ||||||||||||||||||     
T  228069 aataaagaacaatcaatcacaatgcactatttaccacaattcaaggaggtgtgactgaaaagtagaaagtg-aacaaatatatcatgcaattaaaacttg 228167  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
      |  |||||||||||||| | || ||| ||||||| |||| ||||||||||||||    
T  228168 taagttgtgtcttgaaaaaattttaatgttatttttctagaaaaatagcattttcc 228223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 8692610 - 8692708
Alignment:
Q  266 gaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||| ||||  ||||||||||||||||||||| ||  || ||||||||||||| |||||||||||||||||| |||||||||| ||||||||    
T  8692610 gaaaaatagaaagtgaat-aaataaatcatgcaattaaaatttgtcagctgtgtcttgaaagattcttgatgctatttttttagagaaataacattttcc 8692708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 35672462 - 35672345
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||||||||||||||||||||||||| |  ||||||| || || | | | || ||||| || |||| |||||||||||||||||||||| |||    
T  35672462 aataaagagcagtcaatcacaatgcactatttatcgcaatttaaggaaatgttg-taaacaataggaagtgaa-caaataaatcatgcaattaaaattta 35672365  T
Q  310 ccaactgtgtcttgaaaaat 329  Q
     |||||||||||| ||||||    
T  35672364 tcaactgtgtcttcaaaaat 35672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 42148957 - 42149030
Alignment:
Q  292 tcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    |||||||||||||| ||| ||  |||||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  42148957 tcatgcaattaaaatttatcagttgtgtcttgaaaaattcttgatactatttttctagagaaatagcgttttcc 42149030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 38614333 - 38614231
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||||||   |||||||||||||||| || ||| |||| ||  |||| | |||||||||||| || | |||||||||||||||||||||||||||||    
T  38614333 aataaagagcgcccaatcacaatgcactaattgccacaattcaagaagatgtggctgaaaaataggaagt-aaacaaataaatcatgcaattaaaactta 38614235  T
Q  310 ccaa 313  Q
    ||||    
T  38614234 ccaa 38614231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 345
Target Start/End: Original strand, 40925934 - 40926015
Alignment:
Q  263 gctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctattttt 345  Q
    |||||||||||| || |||| |||||||||||| ||||||||||||  ||  |||||||||||||||||||||||||| ||||    
T  40925934 gctgaaaaataggaagtgaa-caaataaatcatacaattaaaacttgtcagatgtgtcttgaaaaattcttgatgctactttt 40926015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 31644727 - 31644808
Alignment:
Q  265 tgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaa--ctgtgtcttgaaaaattcttgatgctattttt 345  Q
    |||||||||| || |||| |||||||| |||||||||||||||||||||   ||||||||| |||||||||||| ||||||||    
T  31644727 tgaaaaataggaagtgaa-caaataaaccatgcaattaaaacttaccaattgtgtgtcttgcaaaattcttgatactattttt 31644808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 308
Target Start/End: Original strand, 29223513 - 29223606
Alignment:
Q  214 aagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactt 308  Q
    |||||||||||| ||||||||||||||| ||| |||| || ||| | |  ||||||||||  || ||  ||||||||||||||||||||||||||    
T  29223513 aagagcagtcaaccacaatgcactatttgccacaattcaaggaggtgtgactgaaaaataagaagtg-tacaaataaatcatgcaattaaaactt 29223606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 43141563 - 43141519
Alignment:
Q  321 ttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||    
T  43141563 ttgaagaattcttgatgctatttttctagagaaataacattttcc 43141519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 31644684 - 31644718
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttacc 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  31644684 aataaagagcagccaatcacaatgcactatttacc 31644718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 6614345 - 6614289
Alignment:
Q  264 ctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaacttaccaactgtgtct 321  Q
    ||||||||||| || |||| |||||||||||||||||||||||||  | |||||||||    
T  6614345 ctgaaaaataggaagtgaa-caaataaatcatgcaattaaaacttgtcgactgtgtct 6614289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 42148869 - 42148944
Alignment:
Q  177 gagcaatgctatatctttagaaaaataaca--aaaaataaagagcagtcaatcacaatgcactatttaccataatt 250  Q
    |||||||| ||||||| ||||||||||| |  || |||||| |||| |||||||||||| |||||||  |||||||    
T  42148869 gagcaatgttatatctctagaaaaataatatcaagaataaatagcactcaatcacaatgtactatttgacataatt 42148944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 365
Target Start/End: Complemental strand, 23992103 - 23991949
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| | ||||||||||||||||| ||| |||| || ||| | | ||||||||||||||| |||| |||| | ||||||||||||||||||     
T  23992103 aataaagagcagcctatcacaatgcactatttgccacaattcaaggaggtgtggctgaaaaatagaaagtgaa-caaaaatatcatgcaattaaaacttg 23992005  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
     ||  |||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  23992004 tcagttgtgtcttgaaaaattcttgatactatgtttctagagaaatagcattttcc 23991949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 210 - 344
Target Start/End: Complemental strand, 27425906 - 27425773
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||| ||||||||||||||||| ||||| ||| |||| || ||| | | | |||||||||| || |||| |||||||||||||||||||||||||     
T  27425906 aataaagaacagtcaatcacaatgcattatttgccacaattcaaggagttgtggttgaaaaataggaagtgaa-caaataaatcatgcaattaaaacttg 27425808  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttt 344  Q
    ||||||||||||||||||||| |||||||||||||    
T  27425807 ccaactgtgtcttgaaaaattgttgatgctatttt 27425773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 42195390 - 42195577
Alignment:
Q  179 gcaatgctatatctttagaaaaataacaaaaa--ataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaa 276  Q
    |||||| ||||||| ||||||||||| |  ||  || ||||||||| |||| ||||||||||||||||| |||| || ||| | |  ||||||||||       
T  42195390 gcaatgttatatctctagaaaaataaaatcaaggattaagagcagttaatctcaatgcactatttaccacaattcaaggaggtgtgtctgaaaaataagg 42195489  T
Q  277 aatgaaacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    | || |||||||||||||||||||||||||||   |  ||| |||| |||||||||||||| ||||||| |||||||||| ||||||||    
T  42195490 agtg-aacaaataaatcatgcaattaaaactttttagttgtatcttaaaaaattcttgatgttatttttctagagaaataacattttcc 42195577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 22326907 - 22327002
Alignment:
Q  213 aaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    ||||||| ||||||||||||| ||||||| ||| |||| |  ||| | |  |||||||||||||| |||| ||||||||||||||||||||||||||    
T  22326907 aaagagccgtcaatcacaatgtactatttgccacaattcagggaggtgtgactgaaaaatagaaagtgaa-caaataaatcatgcaattaaaactta 22327002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 8307639 - 8307723
Alignment:
Q  282 aacaaataaatcatgcaattaaaacttaccaactgtgtcttgaaaaa-ttcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||||||||| |||||| || |||  |||||||||||||| || | |||||||||||| | |||||||| ||||||||    
T  8307639 aacaaataaatcatgcagttaaaatttgccagttgtgtcttgaaaaatttgtcgatgctatttttcttgagaaatatcattttcc 8307723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 25686376 - 25686475
Alignment:
Q  178 agcaatgctatatctttagaaaaa-taaca--aaaaataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatag 274  Q
    ||||||||||||||| || ||||| |||||  || |||||||| || ||||||| |||| ||||||||||| ||||||| ||| | | |||| |||||||    
T  25686376 agcaatgctatatctctaaaaaaaataacatcaagaataaagaacaatcaatcataatgtactatttaccacaatttaaggaggtgtggctggaaaatag 25686475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 210 - 364
Target Start/End: Original strand, 492712 - 492865
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactatttaccataatttaaagagatttagctgaaaaatagaaaatgaaacaaataaatcatgcaattaaaactta 309  Q
    |||||||||||| |||||||||||||| ||||  || |||| || ||| | | |||||||||||| ||||| ||||||||||| |||||||||||||||     
T  492712 aataaagagcagccaatcacaatgcacaatttgtcacaattcaaggaggtgtggctgaaaaataggaaatg-aacaaataaattatgcaattaaaacttg 492810  T
Q  310 ccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttc 364  Q
     |    ||||||||||||| | |||||||||||||| |||||||||| |||||||    
T  492811 actgtcgtgtcttgaaaaaattttgatgctatttttttagagaaataacattttc 492865  T

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Target: scaffold0339 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 13378 - 13442
Alignment:
Q  300 ttaaaacttaccaactgtgtcttgaaaaattcttgatgctatttttatagagaaatagcattttcc 365  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||    
T  13378 ttaaaacttaccatctgtgtcttgaaaa-ttcttgatgctatttttctagagaaatatcattttcc 13442  T

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Target: scaffold0132 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 582 - 613
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactattt 241  Q
    ||||||||||||||||||||||||||||||||    
T  582 aataaagagcagtcaatcacaatgcactattt 613  T

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Target: scaffold0132; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 241
Target Start/End: Original strand, 8542 - 8573
Alignment:
Q  210 aataaagagcagtcaatcacaatgcactattt 241  Q
    ||||||||||||||||||||||||||||||||    
T  8542 aataaagagcagtcaatcacaatgcactattt 8573  T

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