View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_high_12 (Length: 478)

Name: NF19486_high_12
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_high_12
NF19486_high_12
[»] chr2 (10 HSPs)
chr2 (3-478)||(39494489-39494980)
chr2 (306-467)||(39130479-39130640)
chr2 (178-349)||(39130309-39130480)
chr2 (178-301)||(39426829-39426952)
chr2 (313-439)||(39143536-39143662)
chr2 (307-478)||(39426610-39426781)
chr2 (358-467)||(39124557-39124666)
chr2 (233-311)||(39143435-39143513)
chr2 (45-159)||(39426987-39427101)
chr2 (233-283)||(39415120-39415170)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 3 - 478
Target Start/End: Complemental strand, 39494980 - 39494489
Alignment:
Q  3 gagttcgaaccaatgttggagaaatttcatggccaaataaaagagcttgattatgaaaagcagcattttgatagccaggtaaaggaattggaatcaaatg 102  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  39494980 gagtttgaaccaatgttggagaaatttcatggccaaataaaagagcttgaatatgaaaagcagcattttgatagccgggtgaaggaattggaatcaaatg 39494881  T
Q  103 aaaggaaacttgaaggacgagcgagacagctagtgttgaaagagaagcaactcaaaggtctggtgaaagagtttgattcaaa----------------ga 186  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||                ||    
T  39494880 aaaggcaacttgaaagacgagcgagacagctagtgttgaaagaggagcaactcaaaggtctagtgaaagagtttgattcaaaagaggagcaattcaaaga 39494781  T
Q  187 ccaagtgaaggaccttaagtcaaaacaaaaccaacttgatgtccaggtgaaggagctggaatcagaaaaggagcaattcgaaggacaattgaaggagttc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39494780 ccaagtgaaggaccttaagtcaaaacaaaaccaacttgatgtccaggtgaaggagctggaatcagaaaaggagcaattcaaaggacaattgaaggagttc 39494681  T
Q  287 cagacaaaagaaaagctgcttgaagaccgagtaaaggaatttgaatccaaagaggaggaatttaaagctcgaatgcagaatctcaagggttttgtaagcc 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39494680 cagacaaaagaaaagctgcttgaagaccgagtaaaggaatttgaatccaaagaggaggaattcaaagctcgaatgcagaatctcaagggttttgtaagcc 39494581  T
Q  387 aaatggaggatttcaaatcggaagagaaacaatctgaaggacgagggaaagaggcagagtcaaaagacaagaagttcaaagcacacgtgaag 478  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39494580 aaatggaggatttcaaatcggaagagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaag 39494489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 306 - 467
Target Start/End: Original strand, 39130479 - 39130640
Alignment:
Q  306 ttgaagaccgagtaaaggaatttgaatccaaagaggaggaatttaaagctcgaatgcagaatctcaagggttttgtaagccaaatggaggatttcaaatc 405  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||| ||||||||||| | |||||| ||||||||||||||||||| | |||||| ||    
T  39130479 ttgaagaccgagtaaaggaacatgaatccaaagaggaggaattcaaaactcgaatgcaggagctcaagcgttttgtaagccaaatggatggtttcaattc 39130578  T
Q  406 ggaagagaaacaatctgaaggacgagggaaagaggcagagtcaaaagacaagaagttcaaag 467  Q
     ||||||||||||| || |||||||||||||||| |||||||| |||||||||| |||||||    
T  39130579 agaagagaaacaatttgcaggacgagggaaagagccagagtcagaagacaagaaattcaaag 39130640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 39130309 - 39130480
Alignment:
Q  178 attcaaagaccaagtgaaggaccttaagtcaaaacaaaaccaacttgatgtccaggtgaaggagctggaatcagaaaaggagcaattcgaaggacaattg 277  Q
    |||||||| ||  ||||||| |||| |||||||| |||||||||||| |||||  ||||||||||| |||||||||||| || |||||||||||| ||||    
T  39130309 attcaaaggcctggtgaagggccttcagtcaaaagaaaaccaacttggtgtccgtgtgaaggagctcgaatcagaaaagaagaaattcgaaggacgattg 39130408  T
Q  278 aaggagttccagacaaaagaaaagctgcttgaagaccgagtaaaggaatttgaatccaaagaggaggaattt 349  Q
    |||||||||||| ||||| ||||| |||||||||||| ||| |||||  || |||| | |||| ||||||||    
T  39130409 aaggagttccagtcaaaacaaaagttgcttgaagaccaagtgaaggagattcaatcaatagagaaggaattt 39130480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 178 - 301
Target Start/End: Complemental strand, 39426952 - 39426829
Alignment:
Q  178 attcaaagaccaagtgaaggaccttaagtcaaaacaaaaccaacttgatgtccaggtgaaggagctggaatcagaaaaggagcaattcgaaggacaattg 277  Q
    |||||||| |||||||||||||||| |||||||| ||||| |||||||||||| |||||||||| | |||||||||| | ||||||| ||||||||||||    
T  39426952 attcaaaggccaagtgaaggaccttcagtcaaaagaaaacgaacttgatgtccgggtgaaggagatcgaatcagaaacgaagcaatttgaaggacaattg 39426853  T
Q  278 aaggagttccagacaaaagaaaag 301  Q
    |||||| ||||| |||||||||||    
T  39426852 aaggagctccagtcaaaagaaaag 39426829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 313 - 439
Target Start/End: Original strand, 39143536 - 39143662
Alignment:
Q  313 ccgagtaaaggaatttgaatccaaagaggaggaatttaaagctcgaatgcagaatctcaagggttttgtaagccaaatggaggatttcaaatcggaagag 412  Q
    ||||| ||||||||||||||| |||||||| | ||| || ||||||| |||||| |||||||||||||||||||||||||| ||||| ||||| ||||||    
T  39143536 ccgaggaaaggaatttgaatcaaaagaggatggattcaatgctcgaaagcagaagctcaagggttttgtaagccaaatggaagatttgaaatcagaagag 39143635  T
Q  413 aaacaatctgaaggacgagggaaagag 439  Q
    ||||| | |||||||||||||||||||    
T  39143636 aaacattttgaaggacgagggaaagag 39143662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 478
Target Start/End: Complemental strand, 39426781 - 39426610
Alignment:
Q  307 tgaagaccgagtaaaggaatttgaatccaaagaggaggaatttaaagctcgaatgcagaatctcaagggttttgtaagccaaatggaggatttcaaatcg 406  Q
    ||||||||||| ||||||| || | |||| ||||||| || | ||||||||||||||| | |||||| |||||| ||||||||||||||||||  | ||     
T  39426781 tgaagaccgaggaaaggaacttaagtccagagaggagaaactcaaagctcgaatgcaggaactcaagcgttttgcaagccaaatggaggatttttattca 39426682  T
Q  407 gaagagaaacaatctgaaggacgagggaaagaggcagagtcaaaagacaagaagttcaaagcacacgtgaag 478  Q
    ||||| | ||||| ||||||||  ||||||||| | || ||| |||||||||| ||||||| ||||| ||||    
T  39426681 gaagaaatacaatttgaaggacaggggaaagagactgaatcagaagacaagaacttcaaagtacacgagaag 39426610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 467
Target Start/End: Original strand, 39124557 - 39124666
Alignment:
Q  358 aatgcagaatctcaagggttttgtaagccaaatggaggatttcaaatcggaagagaaacaatctgaaggacgagggaaagaggcagagtcaaaagacaag 457  Q
    ||||||| | || ||| |||||||||||||||||||| |||| ||||| ||| |||||||||  ||||||||| ||||||||   |||||| |||| |||    
T  39124557 aatgcaggacctgaagcgttttgtaagccaaatggagaattttaaatcagaacagaaacaattagaaggacgatggaaagagctcgagtcagaagagaag 39124656  T
Q  458 aagttcaaag 467  Q
     |||||||||    
T  39124657 gagttcaaag 39124666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 39143435 - 39143513
Alignment:
Q  233 gtgaaggagctggaatcagaaaaggagcaattcgaaggacaattgaaggagttccagacaaaagaaaagctgcttgaag 311  Q
    ||||||||||| |||| ||||||| ||||||||||||  |||||||||||  |||   |||||||||||||| ||||||    
T  39143435 gtgaaggagcttgaattagaaaagaagcaattcgaagagcaattgaaggatatccgatcaaaagaaaagctggttgaag 39143513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 39427101 - 39426987
Alignment:
Q  45 gagcttgattatgaaaagcagcattttgatagccaggtaaaggaattggaatcaaatgaaaggaaacttgaaggacgagcgagacagctagtgttgaaag 144  Q
    |||||||| | ||||||| ||||||||||||||||| | |||||  |||||||||  || ||| || ||||||||||  |||  ||||||| ||| ||||    
T  39427101 gagcttgaatctgaaaagaagcattttgatagccagatgaaggagatggaatcaagagagaggcaatttgaaggacggtcgaagcagctagagtttaaag 39427002  T
Q  145 agaagcaactcaaag 159  Q
    || ||||||| ||||    
T  39427001 aggagcaactgaaag 39426987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 39415170 - 39415120
Alignment:
Q  233 gtgaaggagctggaatcagaaaaggagcaattcgaaggacaattgaaggag 283  Q
    |||||||||||||||||||||||| |||| |||||| | ||| ||||||||    
T  39415170 gtgaaggagctggaatcagaaaagaagcatttcgaaagccaactgaaggag 39415120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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