View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_high_15 (Length: 408)
Name: NF19486_high_15
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 39023806 - 39024216
Alignment:
| Q |
16 |
cttacaacacaaacaagaaaaatgtgccaagtgaatcattttggcacataatacaagtgtatgaacaatctatagccttcggttcatgatgacttatata |
115 |
Q |
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| T |
39023806 |
cttacaacacaaacaagaaaaatgtgccaagtgaatcattttggcacataatacaagtgtatgaacaatctataaccttcggttcatgatgacttatata |
39023905 |
T |
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| Q |
116 |
tcaccatttgagatgcaattcttaaatgcactttaacttctcgaaggttgttttggcgtattttgacttgatagaaataatctttaaatgagctctaagt |
215 |
Q |
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| T |
39023906 |
tcaccatttgagatgcaattcttaaatgcactttaacttctcgaaggttgttttggcgtattttgacttgatagaaataatctttaaatgagctctaagt |
39024005 |
T |
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| Q |
216 |
ttttgaa--------annnnnnncagttgtaagcagagaattccttggcaaatgatatacatatatcaatacgtactacgttaattatagcattttaaat |
307 |
Q |
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| T |
39024006 |
ttttgaaagagttacatttttttcagttgtaagcagagaattccttggcaaatgatatacatatatcaatacatactacgttaattatagcattttaaat |
39024105 |
T |
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| Q |
308 |
aggctacaccatcg---------------atcacagaaaacatggtgaacccaaacgtatatccatgagcattttgcatggtacttggcgtttaaaacat |
392 |
Q |
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| T |
39024106 |
aggctacaccatcgaaaaccatgatctgtatcacagaaaacatggtgaacccaaacgtatatccatgagcattttgcatggtacttggcgtttaaaatat |
39024205 |
T |
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| Q |
393 |
tttcttttcac |
403 |
Q |
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| T |
39024206 |
tttcttttcac |
39024216 |
T |
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