View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_high_21 (Length: 360)
Name: NF19486_high_21
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 53721780 - 53721601
Alignment:
| Q |
19 |
tcatcactaatttgcgaccggaggtggacaaactgtcaacagagttgtgttggcttctctttgtaaaatcttcctgatatttttatatatacacatctca |
118 |
Q |
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| T |
53721780 |
tcatcactaatttgcgaccggaggtggacaaactgtcaacagagttgtgttggcttctctttgtaaaatcttcctgatatttttatatatacacatctca |
53721681 |
T |
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| Q |
119 |
atcaattcattctttttacctcgcatattagctgccatgccaaactcctgtggattactgagagacacgggtatgcatac |
198 |
Q |
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| T |
53721680 |
atcaattcattctttttacctcgcatattagctgccatgccaaactcctgtggattactgagagacacgggtatgcatac |
53721601 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 53721530 - 53721446
Alignment:
| Q |
268 |
gcaggaatcaggatcctcatagaatttccttgctaaaaagatggatggtgaaatcagatnnnnnnngtcgctttctgcctatgct |
352 |
Q |
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| T |
53721530 |
gcaggaatcaggatcctcatagaatttccttgctaaaaagatggatggtgaaatcagataaaaaaagtcgctttctgcctctgct |
53721446 |
T |
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