View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_high_22 (Length: 357)

Name: NF19486_high_22
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_high_22
NF19486_high_22
[»] chr5 (1 HSPs)
chr5 (220-332)||(28533075-28533187)
[»] chr3 (1 HSPs)
chr3 (220-330)||(51763081-51763191)
[»] chr6 (2 HSPs)
chr6 (262-331)||(6587982-6588051)
chr6 (206-252)||(14810035-14810081)
[»] chr4 (3 HSPs)
chr4 (206-253)||(1537252-1537299)
chr4 (202-299)||(53759964-53760058)
chr4 (206-258)||(1547374-1547426)
[»] chr7 (3 HSPs)
chr7 (206-255)||(15091285-15091334)
chr7 (202-246)||(10167233-10167277)
chr7 (206-238)||(10616213-10616245)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 28533187 - 28533075
Alignment:
Q  220 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 319  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28533187 tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcc 28533088  T
Q  320 tctccatcaccgg 332  Q
    |||||||||||||    
T  28533087 tctccatcaccgg 28533075  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 51763081 - 51763191
Alignment:
Q  220 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcc 319  Q
    |||||||||| ||| |||| ||||||||||||| | | |   |||||| | ||||||||||||| ||||| ||||||||||| ||| ||||||| |||||    
T  51763081 tgttgggaatctatcttcaaattcatcatcaacaatgatgatgacgaagaaaacaaccgtcgcaacttgaattctctctccatcgtttccaaacagttcc 51763180  T
Q  320 tctccatcacc 330  Q
    |||||||||||    
T  51763181 tctccatcacc 51763191  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 331
Target Start/End: Original strand, 6587982 - 6588051
Alignment:
Q  262 gacgaaaacaacaaccgtcgcagcttgagttctctctccaccgtatccaaacggttcctctccatcaccg 331  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||||||||| | ||||||| |||||||||    
T  6587982 gacgaaaacaacaaccgtcacagcatgatttctctctccgccgtatccaagcagttcctcgccatcaccg 6588051  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 14810081 - 14810035
Alignment:
Q  206 atttacctgatgagtgttgggaatgtatattcagattcatcatcaac 252  Q
    ||||||||||||||||||||||| || | || |||||||||||||||    
T  14810081 atttacctgatgagtgttgggaacgtgtctttagattcatcatcaac 14810035  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 1537252 - 1537299
Alignment:
Q  206 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacg 253  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  1537252 atttacctgatgagtgttgggaatgtgtattcagattcctcaacaacg 1537299  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 53759964 - 53760058
Alignment:
Q  202 tcagatttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaacaaccgtcgcagcttgagttctctctc 299  Q
    |||||||||||||||||||| ||||||| ||| |||| | || |||||||| ||   | |||| ||||||||||||||| || ||||| |||||||||    
T  53759964 tcagatttacctgatgagtgctgggaatctatcttcaaactcgtcatcaacaac---aaggacaaaaacaacaaccgtcacaacttgaattctctctc 53760058  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 1547374 - 1547426
Alignment:
Q  206 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt 258  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  1547374 atttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt 1547426  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 15091285 - 15091334
Alignment:
Q  206 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgac 255  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||||||    
T  15091285 atttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac 15091334  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 10167233 - 10167277
Alignment:
Q  202 tcagatttacctgatgagtgttgggaatgtatattcagattcatc 246  Q
    |||||||||||||| || ||||||||||  |||||||||||||||    
T  10167233 tcagatttacctgacgaatgttgggaattgatattcagattcatc 10167277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 10616245 - 10616213
Alignment:
Q  206 atttacctgatgagtgttgggaatgtatattca 238  Q
    |||||||||||||||||||||||||||| ||||    
T  10616245 atttacctgatgagtgttgggaatgtatcttca 10616213  T

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