View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_high_29 (Length: 322)

Name: NF19486_high_29
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_high_29
NF19486_high_29
[»] chr6 (34 HSPs)
chr6 (1-177)||(25546893-25547069)
chr6 (1-177)||(26144780-26144956)
chr6 (1-177)||(26057832-26058008)
chr6 (1-177)||(26077802-26077978)
chr6 (1-177)||(25484971-25485150)
chr6 (1-177)||(25512802-25512978)
chr6 (1-177)||(25581634-25581810)
chr6 (9-177)||(27602782-27602953)
chr6 (8-177)||(26850591-26850760)
chr6 (73-170)||(26657970-26658070)
chr6 (73-170)||(26763941-26764041)
chr6 (239-310)||(26145018-26145089)
chr6 (239-310)||(25485212-25485283)
chr6 (241-310)||(26058074-26058143)
chr6 (241-310)||(26078044-26078113)
chr6 (239-310)||(25513040-25513111)
chr6 (8-89)||(26979322-26979406)
chr6 (239-310)||(25547133-25547204)
chr6 (239-310)||(25581872-25581943)
chr6 (128-177)||(26825872-26825921)
chr6 (8-41)||(26961005-26961038)
chr6 (253-310)||(27696515-27696572)
chr6 (239-310)||(26637721-26637792)
chr6 (239-310)||(26658144-26658215)
chr6 (239-310)||(26743687-26743758)
chr6 (239-310)||(26764115-26764186)
chr6 (2-44)||(26825743-26825785)
chr6 (11-105)||(27216391-27216485)
chr6 (11-48)||(26625160-26625197)
chr6 (8-41)||(26648366-26648399)
chr6 (11-48)||(26731137-26731174)
chr6 (8-41)||(26754334-26754367)
chr6 (8-40)||(25075801-25075833)
chr6 (8-44)||(26938970-26939006)
[»] chr4 (11 HSPs)
chr4 (2-44)||(18687890-18687932)
chr4 (2-44)||(18729772-18729814)
chr4 (253-310)||(18677520-18677577)
chr4 (8-44)||(18653754-18653790)
chr4 (8-44)||(18722350-18722386)
chr4 (8-37)||(18677843-18677872)
chr4 (253-310)||(18697363-18697420)
chr4 (8-37)||(18697685-18697714)
chr4 (253-309)||(18653439-18653495)
chr4 (253-309)||(18687576-18687632)
chr4 (128-168)||(18697551-18697591)
[»] chr1 (2 HSPs)
chr1 (143-177)||(28130796-28130830)
chr1 (8-41)||(266571-266604)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25546893 - 25547069
Alignment:
Q  1 tggcttgcaagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  25546893 tggcttgcaagaagatgacaaatctcaaaacacttatcattgatgattataagttttctgggggtcctgggtatcttccaagtagtttgagatattggaa 25546992  T
Q  101 atggagcttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25546993 atggagattttgtcctttgaagtctccatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 25547069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 26144780 - 26144956
Alignment:
Q  1 tggcttgcaagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  26144780 tggcttgcaagaagatgacaaatctcaaaacacttatcattgaatatgctaacttttcaaggggtcctgggtatcttccaagtagtttgagatattggaa 26144879  T
Q  101 atggagcttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||||  || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26144880 atggatattctgtcctttgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 26144956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 26057832 - 26058008
Alignment:
Q  1 tggcttgcaagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaa 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  26057832 tggcttgcgagaagatgacaaatctcaaaacacttatcattaaagatggtaacttttcaaggggtcctgggtatcttccaagtagtttgagatattggaa 26057931  T
Q  101 atggagcttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||||    | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26057932 atggataagtagtcctttgaagtctctatcttgtatttcgagcaaggcaagtgaaataggttcatttttcaattgtg 26058008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 26077802 - 26077978
Alignment:
Q  1 tggcttgcaagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaa 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  26077802 tggcttgcgagaagatgacaaatctcaaaacacttatcattaaagatggtaacttttcaaggggtcctgggtatcttccaagtagtttgagatattggaa 26077901  T
Q  101 atggagcttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||||    | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26077902 atggataagtagtcctttgaagtctctatcttgtatttcgagcaaggcaagtgaaataggttcatttttcaattgtg 26077978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25484971 - 25485150
Alignment:
Q  1 tggcttgcaagaagatgacaaatctcaaaacacttatcattaaagatgataa---cttatctaggggtcctgggtatcttccaagtagtttgagatattg 97  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||   ||| ||| ||||||||||| |||||||||||||||||||||||||    
T  25484971 tggcttgcaagaagatgacaaatctcaaaacacttatcattgaagatggtaattacttttctgggggtcctgggcatcttccaagtagtttgagatattg 25485070  T
Q  98 gaaatggagcttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    ||||||||    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25485071 gaaatggataagttgtcctttgaagtctctttcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 25485150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25512802 - 25512978
Alignment:
Q  1 tggcttgcaagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||  || ||| ||| ||||||||||||||||||||||||||||||||||||    
T  25512802 tggcttgcaagaagatgacaaatctcaaaacacttatcattgaagattatacgttttctggggatcctgggtatcttccaagtagtttgagatattggaa 25512901  T
Q  101 atggagcttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||| |  ||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25512902 atggtgtgtttgtcctttggaatctctatcttgtattttgagcaaggcaagtgaaataagttcatttttcaattgtg 25512978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25581634 - 25581810
Alignment:
Q  1 tggcttgcaagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaa 100  Q
    |||||| ||| |||||||||||||||||||||||||||||| | ||| |||| || ||| |||||||||||||||||||||||||||||||||||| | |    
T  25581634 tggctttcaataagatgacaaatctcaaaacacttatcattgatgattataagttttctgggggtcctgggtatcttccaagtagtttgagatatttgga 25581733  T
Q  101 atggagcttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||||    || |  ||  |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25581734 atggatagattatgatttcaagtctctgtcttgtattttgagcaaggcaagtgaaataagttcatttttcaattgtg 25581810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 27602953 - 27602782
Alignment:
Q  9 aagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaaatggagct 108  Q
    ||||||||||||||||||||||||||||||||| || ||| | | || ||||| |||||||  |||||||||||||||||||||| ||| |||||||       
T  27602953 aagaagatgacaaatctcaaaacacttatcattgaaaatggtcagttttctagaggtcctgactatcttccaagtagtttgagattttgcaaatggaatg 27602854  T
Q  109 tttgtccttcgaagtctct---atcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
     ||||||||||||||||||   ||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  27602853 gttgtccttcgaagtctctatcatcttgtattttgaacaaggcaagtgaaataaattcatttttcaattgtg 27602782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 26850591 - 26850760
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgaga-tattggaaatggag 106  Q
    ||||||||||||||||||||||||||||||| || ||||||| || || ||||  |||||   ||||||||| |||||||||||| |||||| |||||||    
T  26850591 caagaagatgacaaatctcaaaacacttatcgttgaagatgacaatttttctaaaggtcccaagtatcttccgagtagtttgagagtattgg-aatggag 26850689  T
Q  107 cttttgtccttcgaagtctctatcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
        | | ||||| |||||||||| ||| |||||| |||||||||||||||||  | ||||| ||||||||    
T  26850690 tggatttacttcggagtctctatcatgtttttcgaacaaggcaagtgaaataacataattttccaattgtg 26850760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 26657970 - 26658070
Alignment:
Q  73 atcttccaagtagtttgagatattggaaatggagcttttgtccttcgaagtctctatc---ttgtatttcgagcaaggcaagtgaaataagttcattttt 169  Q
    ||||||||||||||||||||| || ||||||||     ||||||||||||||||||||   ||||||||| | |||||||||||||||||||||||||||    
T  26657970 atcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaagtctctatcatcttgtatttcaaacaaggcaagtgaaataagttcattttt 26658069  T
Q  170 c 170  Q
    |    
T  26658070 c 26658070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 26763941 - 26764041
Alignment:
Q  73 atcttccaagtagtttgagatattggaaatggagcttttgtccttcgaagtctctatc---ttgtatttcgagcaaggcaagtgaaataagttcattttt 169  Q
    ||||||||||||||||||||| || ||||||||     ||||||||||||||||||||   ||||||||| | |||||||||||||||||||||||||||    
T  26763941 atcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaagtctctatcatcttgtatttcaaacaaggcaagtgaaataagttcattttt 26764040  T
Q  170 c 170  Q
    |    
T  26764041 c 26764041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 26145018 - 26145089
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||||| ||||||||||| |  |||||| || ||||||||||||||||||||||||    
T  26145018 gcaggagttcaactatatgaaagtcttgacattgaactattctcgatatttaacccatatacccgatgtctc 26145089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 25485212 - 25485283
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||||| ||||||||||||||  || |  || ||||||||||||||||||||||||    
T  25485212 gcaggagttcaactatatgaaagtcttgacattggatttttgtgaatatttaacccatatacccgatgtctc 25485283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 26058074 - 26058143
Alignment:
Q  241 aggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||| |  |||||||||| | ||||| || ||||||||||||||||||||||||    
T  26058074 aggagttcaactatatgaaagttatgacattggacggttctcaatatttaacccatatacccgatgtctc 26058143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 26078044 - 26078113
Alignment:
Q  241 aggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||| |  |||||||||| | ||||| || ||||||||||||||||||||||||    
T  26078044 aggagttcaactatatgaaagttatgacattggacggttctcaatatttaacccatatacccgatgtctc 26078113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 25513040 - 25513111
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||||| ||||||||||| ||  || |  || ||||||||||||||||||||||||    
T  25513040 gcaggagttcaactatatgaaagtcttgacattgaatttttgtgaatatttaacccatatacccgatgtctc 25513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 26979322 - 26979406
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcattaaagatgat---aacttatctaggggtcctgggtatcttccaagtagtttg 89  Q
    |||||||||||||||||||||||||||||||||| ||| ||||   || || ||||  |||||  ||||||||||||||||||||    
T  26979322 caagaagatgacaaatctcaaaacacttatcattcaagctgatggcaatttttctaaaggtcccaggtatcttccaagtagtttg 26979406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 25547133 - 25547204
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||||| |||||| |||||||  || |  || ||||||||||||||| ||||||||    
T  25547133 gcaggagttcaactatatgaaagtcttgatattggatctttgtgaatatttaacccatatacctgatgtctc 25547204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 25581872 - 25581943
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||||| |||||| ||||||| ||  |  |  ||||||||||||||||||||||||    
T  25581872 gcaggagttcaactatatgaaagtcttgaaattggattatagttcagatttaacccatatacccgatgtctc 25581943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 26825872 - 26825921
Alignment:
Q  128 atcttgtatttcgagcaaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||| |||||| || |||||||||||||||||||||||||| ||||||||    
T  26825872 atctagtattttgaacaaggcaagtgaaataagttcattttccaattgtg 26825921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 26961005 - 26961038
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcatt 41  Q
    ||||||||||||||||||||||||||||||||||    
T  26961005 caagaagatgacaaatctcaaaacacttatcatt 26961038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 27696572 - 27696515
Alignment:
Q  253 atatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||||||||||||||||| |||| |  || |||||| |||||||||||||||||    
T  27696572 atatgaaaatcttgacattggacgattgtgaatatttaacacatatacccgatgtctc 27696515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 26637721 - 26637792
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||| ||||||||||||||||| ||||||||||| |  ||| ||  | |||||| |||||||||||||||||    
T  26637721 gcagaagttcaactatatgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctc 26637792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 26658144 - 26658215
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    ||||||||||||  |||||||| || |||||||||| |||| |  || |||||||||||||||| |||||||    
T  26658144 gcaggagttcaataatatgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctc 26658215  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 26743687 - 26743758
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||| ||||||||||||||||| ||||||||||| |  ||| ||  | |||||| |||||||||||||||||    
T  26743687 gcagaagttcaactatatgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctc 26743758  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 26764115 - 26764186
Alignment:
Q  239 gcaggagttcaactatatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    ||||||||||||  |||||||| || |||||||||| |||| |  || |||||||||||||||| |||||||    
T  26764115 gcaggagttcaataatatgaaattcatgacattggacgattgtgaatatttaacccatatacccaatgtctc 26764186  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 26825743 - 26825785
Alignment:
Q  2 ggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 44  Q
    ||||| || ||||||||||||||||||||||||||| ||||||    
T  26825743 ggctttcatgaagatgacaaatctcaaaacacttattattaaa 26825785  T

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Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 27216391 - 27216485
Alignment:
Q  11 gaagatgacaaatctcaaaacacttatcattaaagatgataacttatctaggggtcctgggtatcttccaagtagtttgagatattggaaatgga 105  Q
    |||||||| ||||||||||||| |||||||| || |||   | || ||||  |||||    |||||||||||||||||||||| |||||||||||    
T  27216391 gaagatgaaaaatctcaaaacatttatcattgaaaatggccatttttctaaaggtcccaattatcttccaagtagtttgagattttggaaatgga 27216485  T

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Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 26625160 - 26625197
Alignment:
Q  11 gaagatgacaaatctcaaaacacttatcattaaagatg 48  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  26625160 gaagatgacaaaactcaaaacacttatcattgaagatg 26625197  T

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Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 26648366 - 26648399
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcatt 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  26648366 caagaagatgacaaaactcaaaacacttatcatt 26648399  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 26731137 - 26731174
Alignment:
Q  11 gaagatgacaaatctcaaaacacttatcattaaagatg 48  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  26731137 gaagatgacaaaactcaaaacacttatcattgaagatg 26731174  T

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Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 26754334 - 26754367
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcatt 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  26754334 caagaagatgacaaaactcaaaacacttatcatt 26754367  T

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Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 25075801 - 25075833
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcat 40  Q
    |||||||||||||||| ||||||||||||||||    
T  25075801 caagaagatgacaaatatcaaaacacttatcat 25075833  T

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Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 26938970 - 26939006
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcattaaa 44  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  26938970 caagaagatgaaaaatcttaaaacacttatcattaaa 26939006  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 18687932 - 18687890
Alignment:
Q  2 ggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 44  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  18687932 ggctttcaagaagatgacaaatctcaaaacacttattattaaa 18687890  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 18729814 - 18729772
Alignment:
Q  2 ggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 44  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  18729814 ggctttcaagaagatgacaaatctcaaaacacttattattaaa 18729772  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 18677577 - 18677520
Alignment:
Q  253 atatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||| |||||||||||||  ||| ||||| |||||||||||||||| |||||||    
T  18677577 atatgaaagtcttgacattggactattgtctatatttaacccatatacccaatgtctc 18677520  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 18653790 - 18653754
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcattaaa 44  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18653790 caagaagatgacaaatctcaaaacacttattattaaa 18653754  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 18722386 - 18722350
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcattaaa 44  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18722386 caagaagatgacaaatctcaaaacacttattattaaa 18722350  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 18677872 - 18677843
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttat 37  Q
    ||||||||||||||||||||||||||||||    
T  18677872 caagaagatgacaaatctcaaaacacttat 18677843  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 18697420 - 18697363
Alignment:
Q  253 atatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtctc 310  Q
    |||||||| |||||||||||||  ||| || || |||||||||||||||| |||||||    
T  18697420 atatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtctc 18697363  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 18697714 - 18697685
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttat 37  Q
    ||||||||||||||||||||||||||||||    
T  18697714 caagaagatgacaaatctcaaaacacttat 18697685  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 18653495 - 18653439
Alignment:
Q  253 atatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtct 309  Q
    |||||||| |||||||||||||  ||| || || |||||||||||||||| ||||||    
T  18653495 atatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtct 18653439  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 18687632 - 18687576
Alignment:
Q  253 atatgaaaatcttgacattggatgattctctatttttaacccatatacccgatgtct 309  Q
    |||||||| |||||||||||||  ||| || || |||||||||||||||| ||||||    
T  18687632 atatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtct 18687576  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 18697591 - 18697551
Alignment:
Q  128 atcttgtatttcgagcaaggcaagtgaaataagttcatttt 168  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  18697591 atcttgtatttgcagcaaggcaagtgaaataatttcatttt 18697551  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 28130830 - 28130796
Alignment:
Q  143 caaggcaagtgaaataagttcatttttcaattgtg 177  Q
    |||||||||||||||||||||||||| ||||||||    
T  28130830 caaggcaagtgaaataagttcattttccaattgtg 28130796  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 266604 - 266571
Alignment:
Q  8 caagaagatgacaaatctcaaaacacttatcatt 41  Q
    |||||||||||||||||||||||||||| |||||    
T  266604 caagaagatgacaaatctcaaaacacttgtcatt 266571  T

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